(7 nodes) Rudiment single hybrid motif network (Streptomyces sp. CCMMD2014)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	purD	Phosphoribosylamine--glycine ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GARS family. (416 aa)
	AIV35850.1	acetyl-CoA carboxylase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (617 aa)
	AIV38886.1	acetyl-COA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (674 aa)
	purK	Phosphoribosylaminoimidazole carboxylase; Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR). (379 aa)
	AIV32320.1	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second. (1124 aa)
	AIV34523.1	acetyl-COA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (590 aa)
	AIV35321.1	acetyl-COA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (590 aa)

Your Current Organism:

Streptomyces sp. CCMMD2014

NCBI taxonomy Id: 1561022
Other names: S. sp. CCM_MD2014, Streptomyces sp. CCM_MD2014

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIV32320.1	AIV34523.1	NI25_01285	NI25_14300	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	acetyl-COA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.701
AIV32320.1	AIV35321.1	NI25_01285	NI25_18935	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	acetyl-COA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.702
AIV32320.1	AIV35850.1	NI25_01285	NI25_22165	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	acetyl-CoA carboxylase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.710
AIV32320.1	AIV38886.1	NI25_01285	NI25_24970	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	acetyl-COA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.701
AIV34523.1	AIV32320.1	NI25_14300	NI25_01285	acetyl-COA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	0.701
AIV34523.1	AIV35321.1	NI25_14300	NI25_18935	acetyl-COA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-COA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AIV34523.1	AIV35850.1	NI25_14300	NI25_22165	acetyl-COA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-CoA carboxylase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.647
AIV34523.1	AIV38886.1	NI25_14300	NI25_24970	acetyl-COA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-COA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.912
AIV35321.1	AIV32320.1	NI25_18935	NI25_01285	acetyl-COA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	0.702
AIV35321.1	AIV34523.1	NI25_18935	NI25_14300	acetyl-COA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-COA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AIV35321.1	AIV35850.1	NI25_18935	NI25_22165	acetyl-COA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-CoA carboxylase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.647
AIV35321.1	AIV38886.1	NI25_18935	NI25_24970	acetyl-COA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-COA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.912
AIV35850.1	AIV32320.1	NI25_22165	NI25_01285	acetyl-CoA carboxylase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	0.710
AIV35850.1	AIV34523.1	NI25_22165	NI25_14300	acetyl-CoA carboxylase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-COA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.647
AIV35850.1	AIV35321.1	NI25_22165	NI25_18935	acetyl-CoA carboxylase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-COA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.647
AIV35850.1	AIV38886.1	NI25_22165	NI25_24970	acetyl-CoA carboxylase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-COA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.640
AIV38886.1	AIV32320.1	NI25_24970	NI25_01285	acetyl-COA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.	0.701
AIV38886.1	AIV34523.1	NI25_24970	NI25_14300	acetyl-COA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-COA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.912
AIV38886.1	AIV35321.1	NI25_24970	NI25_18935	acetyl-COA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-COA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.912
AIV38886.1	AIV35850.1	NI25_24970	NI25_22165	acetyl-COA carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acetyl-CoA carboxylase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.640