(12 nodes) Chloramphenicol acetyltransferase-like domain superfamily network (Streptomyces sp. CCMMD2014)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIV35284.1	Branched-chain alpha-keto acid dehydrogenase subunit E2; Derived by automated computational analysis using gene prediction method: Protein Homology. (485 aa)
	AIV36892.1	Dihydrolipoamide acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (597 aa)
	AIV34906.1	Acyltransferase papA2; Derived by automated computational analysis using gene prediction method: Protein Homology. (467 aa)
	kgd	Alpha-ketoglutarate decarboxylase; Kgd; produces succinic semialdehyde; part of alternative pathway from alpha-ketoglutarate to succinate; essential for normal growth; Derived by automated computational analysis using gene prediction method: Protein Homology. (1271 aa)
	AIV33456.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (740 aa)
	AIV32785.1	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (2230 aa)
	AIV32784.1	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1856 aa)
	AIV32768.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (3073 aa)
	AIV32767.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family. (1051 aa)
	AIV32766.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (2169 aa)
	AIV32283.1	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (3668 aa)
	AIV35296.1	Branched-chain alpha-keto acid dehydrogenase subunit E2; Derived by automated computational analysis using gene prediction method: Protein Homology. (479 aa)

Your Current Organism:

Streptomyces sp. CCMMD2014

NCBI taxonomy Id: 1561022
Other names: S. sp. CCM_MD2014, Streptomyces sp. CCM_MD2014

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIV32283.1	AIV32766.1	NI25_01080	NI25_03840	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.612
AIV32283.1	AIV32767.1	NI25_01080	NI25_03845	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family.	0.628
AIV32283.1	AIV32768.1	NI25_01080	NI25_03855	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.933
AIV32283.1	AIV32784.1	NI25_01080	NI25_03970	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.463
AIV32283.1	AIV32785.1	NI25_01080	NI25_03975	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.721
AIV32283.1	AIV33456.1	NI25_01080	NI25_08085	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.904
AIV32766.1	AIV32283.1	NI25_03840	NI25_01080	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.612
AIV32766.1	AIV32767.1	NI25_03840	NI25_03845	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family.	0.988
AIV32766.1	AIV32768.1	NI25_03840	NI25_03855	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
AIV32766.1	AIV32784.1	NI25_03840	NI25_03970	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974
AIV32766.1	AIV32785.1	NI25_03840	NI25_03975	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982
AIV32766.1	AIV33456.1	NI25_03840	NI25_08085	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
AIV32766.1	AIV34906.1	NI25_03840	NI25_16465	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyltransferase papA2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.541
AIV32767.1	AIV32283.1	NI25_03845	NI25_01080	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family.	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.628
AIV32767.1	AIV32766.1	NI25_03845	NI25_03840	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
AIV32767.1	AIV32768.1	NI25_03845	NI25_03855	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
AIV32767.1	AIV32784.1	NI25_03845	NI25_03970	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family.	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.916
AIV32767.1	AIV32785.1	NI25_03845	NI25_03975	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family.	Peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.944
AIV32767.1	AIV33456.1	NI25_03845	NI25_08085	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
AIV32767.1	AIV34906.1	NI25_03845	NI25_16465	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family.	Acyltransferase papA2; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.445