(26 nodes) Mixed, incl. beta-Lactam resistance, and Helix-turn-helix XRE-family like proteins network (Paenibacillus sp. IHBB10380)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AJS58263.1	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (69 aa)
	AJS58264.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (107 aa)
	AJS58594.1	Beta-lactamase repressor; Derived by automated computational analysis using gene prediction method: Protein Homology. (136 aa)
	AJS58616.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (463 aa)
	AJS58617.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily. (138 aa)
	AJS58664.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (754 aa)
	AJS58665.1	Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology. (132 aa)
	AJS58666.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (70 aa)
	AJS58667.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (148 aa)
	AJS58668.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (239 aa)
	AJS59043.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (95 aa)
	AJS61538.1	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa)
	AJS59308.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (65 aa)
	AJS59310.1	MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (87 aa)
	AJS59311.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (328 aa)
	AJS60512.1	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (69 aa)
	AJS60608.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (499 aa)
	AJS61683.1	Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology. (129 aa)
	AJS60988.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (447 aa)
	AJS60989.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (124 aa)
	AJS61176.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (351 aa)
	AJS61177.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (502 aa)
	AJS61178.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (252 aa)
	AJS61179.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1493 aa)
	AJS61224.1	CopY family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (119 aa)
	AJS61225.1	Peptidase M56 BlaR1; Derived by automated computational analysis using gene prediction method: Protein Homology. (483 aa)

Your Current Organism:

Paenibacillus sp. IHBB10380

NCBI taxonomy Id: 1566358
Other names: P. sp. IHBB 10380, Paenibacillus sp. IHBB 10380

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJS58263.1	AJS58264.1	UB51_06875	UB51_06880	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.780
AJS58264.1	AJS58263.1	UB51_06880	UB51_06875	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.780
AJS58594.1	AJS58664.1	UB51_08950	UB51_09420	Beta-lactamase repressor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.985
AJS58594.1	AJS60988.1	UB51_08950	UB51_23890	Beta-lactamase repressor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.985
AJS58594.1	AJS61225.1	UB51_08950	UB51_25420	Beta-lactamase repressor; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase M56 BlaR1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.973
AJS58616.1	AJS58617.1	UB51_09085	UB51_09090	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	0.511
AJS58617.1	AJS58616.1	UB51_09090	UB51_09085	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.511
AJS58664.1	AJS58594.1	UB51_09420	UB51_08950	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-lactamase repressor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.985
AJS58664.1	AJS58665.1	UB51_09420	UB51_09425	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
AJS58664.1	AJS60988.1	UB51_09420	UB51_23890	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.925
AJS58664.1	AJS60989.1	UB51_09420	UB51_23895	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.985
AJS58664.1	AJS61224.1	UB51_09420	UB51_25415	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	CopY family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.983
AJS58664.1	AJS61225.1	UB51_09420	UB51_25420	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase M56 BlaR1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.939
AJS58664.1	AJS61683.1	UB51_09420	UB51_21525	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
AJS58665.1	AJS58664.1	UB51_09425	UB51_09420	Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
AJS58665.1	AJS58666.1	UB51_09425	UB51_09430	Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.419
AJS58665.1	AJS60988.1	UB51_09425	UB51_23890	Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.985
AJS58665.1	AJS61224.1	UB51_09425	UB51_25415	Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.	CopY family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.732
AJS58665.1	AJS61225.1	UB51_09425	UB51_25420	Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase M56 BlaR1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.972
AJS58666.1	AJS58665.1	UB51_09430	UB51_09425	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.419