(13 nodes) Mixed, incl. MetI-like superfamily, and Bacterial extracellular solute-binding protein network (Corynebacterium riegelii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AKV58512.1	ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (365 aa)
	AKV59835.1	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (535 aa)
	AKV58513.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (348 aa)
	AKV58978.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (429 aa)
	AKV59909.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (305 aa)
	AKV58979.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa)
	AKV59291.1	Multidrug ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (287 aa)
	AKV59423.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (197 aa)
	AKV59424.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (304 aa)
	AKV59425.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (281 aa)
	AKV59426.1	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (442 aa)
	AKV59993.1	Lipopolysaccharide kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (403 aa)
	AKV59427.1	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (378 aa)

Your Current Organism:

Corynebacterium riegelii

NCBI taxonomy Id: 156976
Other names: ATCC 700782, C. riegelii, CCUG 38180, CIP 105310, DMMZ 2415, DSM 44326, JCM 10389

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKV58512.1	AKV58513.1	AK829_04230	AK829_04240	ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
AKV58512.1	AKV58979.1	AK829_04230	AK829_07180	ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.610
AKV58512.1	AKV59424.1	AK829_04230	AK829_10090	ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.467
AKV58512.1	AKV59425.1	AK829_04230	AK829_10095	ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.472
AKV58512.1	AKV59427.1	AK829_04230	AK829_10110	ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.717
AKV58512.1	AKV59835.1	AK829_04230	AK829_04235	ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.987
AKV58512.1	AKV59909.1	AK829_04230	AK829_07175	ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.608
AKV58513.1	AKV58512.1	AK829_04240	AK829_04230	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
AKV58513.1	AKV59425.1	AK829_04240	AK829_10095	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.406
AKV58513.1	AKV59427.1	AK829_04240	AK829_10110	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.663
AKV58513.1	AKV59835.1	AK829_04240	AK829_04235	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
AKV58513.1	AKV59909.1	AK829_04240	AK829_07175	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.411
AKV58978.1	AKV58979.1	AK829_07170	AK829_07180	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AKV58978.1	AKV59424.1	AK829_07170	AK829_10090	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
AKV58978.1	AKV59425.1	AK829_07170	AK829_10095	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.975
AKV58978.1	AKV59426.1	AK829_07170	AK829_10100	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.428
AKV58978.1	AKV59427.1	AK829_07170	AK829_10110	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.998
AKV58978.1	AKV59909.1	AK829_07170	AK829_07175	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
AKV58979.1	AKV58512.1	AK829_07180	AK829_04230	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.610
AKV58979.1	AKV58978.1	AK829_07180	AK829_07170	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999