(26 nodes) ABC-type transporter activity network (Corynebacterium riegelii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AKV58939.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (592 aa)
	AKV57921.1	Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (623 aa)
	AKV58217.1	Glutamate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (241 aa)
	AKV58364.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (514 aa)
	AKV58365.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (601 aa)
	AKV58485.1	Arginine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (257 aa)
	AKV58512.1	ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (365 aa)
	AKV58551.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (248 aa)
	AKV58552.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (249 aa)
	AKV58627.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1192 aa)
	AKV58775.1	Phosphonate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (270 aa)
	phnC	Phosphonate ABC transporter ATP-binding protein; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family. (265 aa)
	AKV58930.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (78 aa)
	AKV58938.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (578 aa)
	AKV59909.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (305 aa)
	metN	Methionine ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. (343 aa)
	AKV59040.1	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (577 aa)
	AKV59041.1	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (848 aa)
	AKV59324.1	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)
	AKV59983.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (193 aa)
	AKV59425.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (281 aa)
	AKV59427.1	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (378 aa)
	AKV59559.1	Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (595 aa)
	AKV59560.1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (582 aa)
	AKV59574.1	Multidrug ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (610 aa)
	AKV59575.1	Multidrug ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (555 aa)

Your Current Organism:

Corynebacterium riegelii

NCBI taxonomy Id: 156976
Other names: ATCC 700782, C. riegelii, CCUG 38180, CIP 105310, DMMZ 2415, DSM 44326, JCM 10389

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKV57921.1	AKV59040.1	AK829_00605	AK829_07595	Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.860
AKV57921.1	AKV59559.1	AK829_00605	AK829_11015	Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.851
AKV58217.1	AKV58365.1	AK829_02460	AK829_03375	Glutamate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.457
AKV58217.1	AKV58939.1	AK829_02460	AK829_06920	Glutamate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.601
AKV58217.1	AKV59575.1	AK829_02460	AK829_11110	Glutamate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.482
AKV58364.1	AKV58365.1	AK829_03370	AK829_03375	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.958
AKV58364.1	AKV58512.1	AK829_03370	AK829_04230	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.458
AKV58364.1	AKV59040.1	AK829_03370	AK829_07595	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.832
AKV58364.1	AKV59559.1	AK829_03370	AK829_11015	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.846
AKV58364.1	metN	AK829_03370	AK829_07545	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methionine ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	0.400
AKV58365.1	AKV58217.1	AK829_03375	AK829_02460	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.457
AKV58365.1	AKV58364.1	AK829_03375	AK829_03370	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.958
AKV58365.1	AKV58485.1	AK829_03375	AK829_04070	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arginine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.573
AKV58365.1	AKV58930.1	AK829_03375	AK829_06860	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.769
AKV58365.1	AKV59040.1	AK829_03375	AK829_07595	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.866
AKV58365.1	AKV59559.1	AK829_03375	AK829_11015	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.864
AKV58365.1	metN	AK829_03375	AK829_07545	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methionine ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	0.773
AKV58485.1	AKV58365.1	AK829_04070	AK829_03375	Arginine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.573
AKV58485.1	AKV59575.1	AK829_04070	AK829_11110	Arginine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Multidrug ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.540
AKV58512.1	AKV58364.1	AK829_04230	AK829_03370	ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.458