(20 nodes) MetI-like superfamily network (Corynebacterium riegelii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AKV58775.1	Phosphonate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (270 aa)
	AKV59909.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (305 aa)
	AKV58979.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa)
	AKV59033.1	Methionine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (234 aa)
	AKV59046.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (294 aa)
	AKV59047.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)
	AKV59835.1	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (535 aa)
	AKV58657.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (327 aa)
	AKV59860.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (311 aa)
	AKV58660.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (326 aa)
	AKV58661.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (308 aa)
	AKV59425.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (281 aa)
	AKV59424.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (304 aa)
	pstA	Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (313 aa)
	pstC	Phosphate ABC transporter permease; Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily. (354 aa)
	AKV58215.1	Glutamate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (228 aa)
	AKV58484.1	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (325 aa)
	AKV58214.1	Glutamate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (318 aa)
	AKV57912.1	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (257 aa)
	AKV57913.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (286 aa)

Your Current Organism:

Corynebacterium riegelii

NCBI taxonomy Id: 156976
Other names: ATCC 700782, C. riegelii, CCUG 38180, CIP 105310, DMMZ 2415, DSM 44326, JCM 10389

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... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKV57912.1	AKV57913.1	AK829_00560	AK829_00565	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.983
AKV57912.1	AKV58657.1	AK829_00560	AK829_05110	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.928
AKV57912.1	AKV58661.1	AK829_00560	AK829_05135	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.929
AKV57912.1	AKV59046.1	AK829_00560	AK829_07650	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.677
AKV57912.1	AKV59047.1	AK829_00560	AK829_07655	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.941
AKV57913.1	AKV57912.1	AK829_00565	AK829_00560	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.983
AKV57913.1	AKV58657.1	AK829_00565	AK829_05110	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.632
AKV57913.1	AKV58660.1	AK829_00565	AK829_05130	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.929
AKV57913.1	AKV59046.1	AK829_00565	AK829_07650	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.944
AKV57913.1	AKV59047.1	AK829_00565	AK829_07655	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.678
AKV57913.1	AKV59860.1	AK829_00565	AK829_05115	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.907
AKV58214.1	AKV58215.1	AK829_02445	AK829_02450	Glutamate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AKV58214.1	AKV58484.1	AK829_02445	AK829_04065	Glutamate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.805
AKV58215.1	AKV58214.1	AK829_02450	AK829_02445	Glutamate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AKV58215.1	AKV58484.1	AK829_02450	AK829_04065	Glutamate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.763
AKV58484.1	AKV58214.1	AK829_04065	AK829_02445	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.805
AKV58484.1	AKV58215.1	AK829_04065	AK829_02450	Amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.763
AKV58657.1	AKV57912.1	AK829_05110	AK829_00560	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.928
AKV58657.1	AKV57913.1	AK829_05110	AK829_00565	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.632
AKV58657.1	AKV58660.1	AK829_05110	AK829_05130	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.921