(12 nodes) Mixed, incl. NlpA lipoprotein, and NIL domain network (Corynebacterium imitans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AIJ32580.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (178 aa)
	dapE_1	Acetylornithine deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (444 aa)
	AIJ32582.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (184 aa)
	AIJ32841.1	Methionine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (209 aa)
	metN_1	ABC transporter; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. (348 aa)
	metQ1	Metal ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
	AIJ32892.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (259 aa)
	metP	Methionine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa)
	metN_2	Methionine ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system. (343 aa)
	MetQ_1	Methionine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)
	MetQ_2	Methionine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (297 aa)
	AIJ32917.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (67 aa)

Your Current Organism:

Corynebacterium imitans

NCBI taxonomy Id: 156978
Other names: ATCC 700354, C. imitans, CCUG 36877, CIP 105130, Corynebacterium sp. 2023, DSM 44264, IFO 16163, JCM 10386, NBRC 100416, NBRC 16163, NCTC 13015

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIJ32580.1	AIJ32582.1	CIMIT_00355	CIMIT_00365	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.453
AIJ32580.1	dapE_1	CIMIT_00355	CIMIT_00360	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acetylornithine deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.726
AIJ32582.1	AIJ32580.1	CIMIT_00365	CIMIT_00355	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.453
AIJ32582.1	dapE_1	CIMIT_00365	CIMIT_00360	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acetylornithine deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.647
AIJ32841.1	MetQ_1	CIMIT_01990	CIMIT_02305	Methionine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methionine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.985
AIJ32841.1	MetQ_2	CIMIT_01990	CIMIT_02310	Methionine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methionine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
AIJ32841.1	metN_1	CIMIT_01990	CIMIT_01995	Methionine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	0.996
AIJ32841.1	metN_2	CIMIT_01990	CIMIT_02300	Methionine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methionine ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	0.989
AIJ32841.1	metP	CIMIT_01990	CIMIT_02295	Methionine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methionine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.908
AIJ32841.1	metQ1	CIMIT_01990	CIMIT_02000	Methionine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Metal ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
AIJ32892.1	MetQ_1	CIMIT_02290	CIMIT_02305	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methionine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.549
AIJ32892.1	MetQ_2	CIMIT_02290	CIMIT_02310	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methionine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.500
AIJ32892.1	metN_2	CIMIT_02290	CIMIT_02300	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methionine ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	0.643
AIJ32892.1	metP	CIMIT_02290	CIMIT_02295	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methionine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.643
MetQ_1	AIJ32841.1	CIMIT_02305	CIMIT_01990	Methionine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methionine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.985
MetQ_1	AIJ32892.1	CIMIT_02305	CIMIT_02290	Methionine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.549
MetQ_1	MetQ_2	CIMIT_02305	CIMIT_02310	Methionine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methionine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.966
MetQ_1	metN_1	CIMIT_02305	CIMIT_01995	Methionine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	0.985
MetQ_1	metN_2	CIMIT_02305	CIMIT_02300	Methionine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methionine ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.	0.998
MetQ_1	metP	CIMIT_02305	CIMIT_02295	Methionine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methionine ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996

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