(74 nodes) GTP hydrolysis and joining of the 60S ribosomal subunit network (Trichobilharzia regenti)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TRE_LOCUS898	Ribosomal_L7Ae domain-containing protein. (117 aa)
	TRE_LOCUS1235	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family. (66 aa)
	TRE_LOCUS128	Uncharacterized protein. (122 aa)
	A0A183VKE0	Uncharacterized protein. (118 aa)
	TRE_LOCUS1649	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (70 aa)
	TRE_LOCUS2192	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family. (145 aa)
	TRE_LOCUS2255	Eukaryotic translation initiation factor 5A. (151 aa)
	TRE_LOCUS3217	Uncharacterized protein. (124 aa)
	TRE_LOCUS3832	Ribosomal protein L37; Binds to the 23S rRNA. (88 aa)
	TRE_LOCUS3968	Uncharacterized protein; Belongs to the universal ribosomal protein uS3 family. (228 aa)
	TRE_LOCUS3982	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (81 aa)
	A0A183VUD6	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (179 aa)
	TRE_LOCUS4201	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (246 aa)
	TRE_LOCUS4618	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family. (152 aa)
	TRE_LOCUS4635	Uncharacterized protein. (331 aa)
	TRE_LOCUS4857	Uncharacterized protein. (132 aa)
	TRE_LOCUS5255	Ribosomal_L7Ae domain-containing protein. (239 aa)
	TRE_LOCUS5444	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (236 aa)
	TRE_LOCUS5876	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (204 aa)
	TRE_LOCUS5893	Tr-type G domain-containing protein. (850 aa)
	TRE_LOCUS5908	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family. (192 aa)
	A0A183VZM2	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (174 aa)
	A0A183W145	Uncharacterized protein. (170 aa)
	TRE_LOCUS6723	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family. (113 aa)
	TRE_LOCUS6976	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (204 aa)
	A0A183W2Z7	Uncharacterized protein. (205 aa)
	A0A183W4K8	Uncharacterized protein. (252 aa)
	A0A183W6J0	Uncharacterized protein. (160 aa)
	TRE_LOCUS7919	Uncharacterized protein. (61 aa)
	A0A183W7Y9	Uncharacterized protein. (127 aa)
	TRE_LOCUS8520	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family. (115 aa)
	A0A183WAE7	Uncharacterized protein. (120 aa)
	TRE_LOCUS9369	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (282 aa)
	TRE_LOCUS9385	Ribosomal_L18_c domain-containing protein. (296 aa)
	TRE_LOCUS9802	Ribosomal_L14e domain-containing protein. (107 aa)
	TRE_LOCUS9969	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family. (203 aa)
	TRE_LOCUS9995	Ribosomal_L23eN domain-containing protein. (184 aa)
	A0A183WDI3	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family. (158 aa)
	TRE_LOCUS10297	Uncharacterized protein. (113 aa)
	A0A183WE07	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (255 aa)
	TRE_LOCUS10970	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (165 aa)
	TRE_LOCUS11702	Ribosomal_L18e/L15P domain-containing protein. (229 aa)
	A0A183WI48	Uncharacterized protein. (35 aa)
	TRE_LOCUS11931	Uncharacterized protein. (179 aa)
	A0A183WIU6	Ribosomal_S10 domain-containing protein. (70 aa)
	TRE_LOCUS12240	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (101 aa)
	TRE_LOCUS12492	Uncharacterized protein. (56 aa)
	TRE_LOCUS12626	Uncharacterized protein. (127 aa)
	TRE_LOCUS12677	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (114 aa)
	TRE_LOCUS12985	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (132 aa)
	TRE_LOCUS13009	Uncharacterized protein. (217 aa)
	TRE_LOCUS13333	Ubiquitin-like domain-containing protein. (142 aa)
	TRE_LOCUS13940	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family. (106 aa)
	TRE_LOCUS14444	Ribos_L4_asso_C domain-containing protein. (336 aa)
	TRE_LOCUS14450	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (173 aa)
	TRE_LOCUS14638	Uncharacterized protein. (121 aa)
	TRE_LOCUS14792	Uncharacterized protein. (122 aa)
	TRE_LOCUS15091	Uncharacterized protein. (186 aa)
	A0A183WUU4	Ribosomal_L19e domain-containing protein. (139 aa)
	A0A183WW46	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family. (243 aa)
	A0A183WWK8	Uncharacterized protein. (91 aa)
	TRE_LOCUS16534	Ribosomal_L16 domain-containing protein. (71 aa)
	TRE_LOCUS17231	Ribosomal_L2_C domain-containing protein. (270 aa)
	TRE_LOCUS17305	Uncharacterized protein. (83 aa)
	TRE_LOCUS17414	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family. (194 aa)
	A0A183X0L4	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (114 aa)
	A0A183X248	Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family. (138 aa)
	A0A183X4R4	Uncharacterized protein. (51 aa)
	TRE_LOCUS19726	Ubiquitin-like domain-containing protein. (140 aa)
	TRE_LOCUS19812	Uncharacterized protein. (99 aa)
	TRE_LOCUS20195	Uncharacterized protein. (112 aa)
	TRE_LOCUS21250	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (123 aa)
	TRE_LOCUS21513	Ribosomal_L28e domain-containing protein. (129 aa)
	A0A183XB15	Uncharacterized protein. (44 aa)

Your Current Organism:

Trichobilharzia regenti

NCBI taxonomy Id: 157069
Other names: T. regenti, bird nasal schistosome

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A183VKE0	A0A183VUD6	A0A183VKE0	A0A183VUD6	Uncharacterized protein.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.999
A0A183VKE0	A0A183VZM2	A0A183VKE0	A0A183VZM2	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.999
A0A183VKE0	A0A183W145	A0A183VKE0	A0A183W145	Uncharacterized protein.	Uncharacterized protein.	0.987
A0A183VKE0	A0A183W2Z7	A0A183VKE0	A0A183W2Z7	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A183VKE0	A0A183W4K8	A0A183VKE0	A0A183W4K8	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A183VKE0	A0A183W6J0	A0A183VKE0	A0A183W6J0	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A183VKE0	A0A183W7Y9	A0A183VKE0	A0A183W7Y9	Uncharacterized protein.	Uncharacterized protein.	0.997
A0A183VKE0	A0A183WAE7	A0A183VKE0	A0A183WAE7	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A183VKE0	A0A183WDI3	A0A183VKE0	A0A183WDI3	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.	0.999
A0A183VKE0	A0A183WE07	A0A183VKE0	A0A183WE07	Uncharacterized protein.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.999
A0A183VKE0	A0A183WI48	A0A183VKE0	A0A183WI48	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A183VKE0	A0A183WIU6	A0A183VKE0	A0A183WIU6	Uncharacterized protein.	Ribosomal_S10 domain-containing protein.	0.999
A0A183VKE0	A0A183WUU4	A0A183VKE0	A0A183WUU4	Uncharacterized protein.	Ribosomal_L19e domain-containing protein.	0.999
A0A183VKE0	A0A183WW46	A0A183VKE0	A0A183WW46	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.999
A0A183VKE0	A0A183WWK8	A0A183VKE0	A0A183WWK8	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A183VKE0	A0A183X0L4	A0A183VKE0	A0A183X0L4	Uncharacterized protein.	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	0.999
A0A183VKE0	A0A183X248	A0A183VKE0	A0A183X248	Uncharacterized protein.	Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family.	0.999
A0A183VKE0	A0A183X4R4	A0A183VKE0	A0A183X4R4	Uncharacterized protein.	Uncharacterized protein.	0.997
A0A183VKE0	A0A183XB15	A0A183VKE0	A0A183XB15	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A183VKE0	TRE_LOCUS10297	A0A183VKE0	A0A183WDU4	Uncharacterized protein.	Uncharacterized protein.	0.999