(5 nodes) Mixed, incl. Ribosomal protein S12/S23, and Ribosomal protein L4, eukaryotic and archaeal type network (Trichobilharzia regenti)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TRE_LOCUS1649	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (70 aa)
	TRE_LOCUS2192	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family. (145 aa)
	TRE_LOCUS11931	Uncharacterized protein. (179 aa)
	TRE_LOCUS12626	Uncharacterized protein. (127 aa)
	TRE_LOCUS14450	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (173 aa)

Your Current Organism:

Trichobilharzia regenti

NCBI taxonomy Id: 157069
Other names: T. regenti, bird nasal schistosome

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TRE_LOCUS11931	TRE_LOCUS12626	A0A183WIH7	A0A183WKH3	Uncharacterized protein.	Uncharacterized protein.	0.999
TRE_LOCUS11931	TRE_LOCUS14450	A0A183WIH7	A0A183WQP6	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.999
TRE_LOCUS11931	TRE_LOCUS1649	A0A183WIH7	A0A183VME3	Uncharacterized protein.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.999
TRE_LOCUS11931	TRE_LOCUS2192	A0A183WIH7	A0A183VNY6	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	0.999
TRE_LOCUS12626	TRE_LOCUS11931	A0A183WKH3	A0A183WIH7	Uncharacterized protein.	Uncharacterized protein.	0.999
TRE_LOCUS12626	TRE_LOCUS14450	A0A183WKH3	A0A183WQP6	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.999
TRE_LOCUS12626	TRE_LOCUS1649	A0A183WKH3	A0A183VME3	Uncharacterized protein.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.999
TRE_LOCUS12626	TRE_LOCUS2192	A0A183WKH3	A0A183VNY6	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	0.999
TRE_LOCUS14450	TRE_LOCUS11931	A0A183WQP6	A0A183WIH7	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Uncharacterized protein.	0.999
TRE_LOCUS14450	TRE_LOCUS12626	A0A183WQP6	A0A183WKH3	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Uncharacterized protein.	0.999
TRE_LOCUS14450	TRE_LOCUS1649	A0A183WQP6	A0A183VME3	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.999
TRE_LOCUS14450	TRE_LOCUS2192	A0A183WQP6	A0A183VNY6	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	0.999
TRE_LOCUS1649	TRE_LOCUS11931	A0A183VME3	A0A183WIH7	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	Uncharacterized protein.	0.999
TRE_LOCUS1649	TRE_LOCUS12626	A0A183VME3	A0A183WKH3	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	Uncharacterized protein.	0.999
TRE_LOCUS1649	TRE_LOCUS14450	A0A183VME3	A0A183WQP6	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.999
TRE_LOCUS1649	TRE_LOCUS2192	A0A183VME3	A0A183VNY6	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	0.999
TRE_LOCUS2192	TRE_LOCUS11931	A0A183VNY6	A0A183WIH7	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	Uncharacterized protein.	0.999
TRE_LOCUS2192	TRE_LOCUS12626	A0A183VNY6	A0A183WKH3	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	Uncharacterized protein.	0.999
TRE_LOCUS2192	TRE_LOCUS14450	A0A183VNY6	A0A183WQP6	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.999
TRE_LOCUS2192	TRE_LOCUS1649	A0A183VNY6	A0A183VME3	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.999