(10 nodes) dGDP phosphorylation, and GDP metabolic process network (Trichobilharzia regenti)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A183VWL0	Uncharacterized protein. (130 aa)
	TRE_LOCUS5623	Uncharacterized protein. (127 aa)
	TRE_LOCUS9505	Uncharacterized protein. (322 aa)
	A0A183WEP1	Uncharacterized protein. (221 aa)
	TRE_LOCUS11867	Uncharacterized protein. (118 aa)
	A0A183WR35	Uncharacterized protein. (413 aa)
	A0A183X333	Guanylate kinase-like domain-containing protein. (138 aa)
	TRE_LOCUS18866	NDK domain-containing protein. (138 aa)
	TRE_LOCUS19984	Uncharacterized protein. (143 aa)
	TRE_LOCUS21315	Uncharacterized protein. (108 aa)

Your Current Organism:

Trichobilharzia regenti

NCBI taxonomy Id: 157069
Other names: T. regenti, bird nasal schistosome

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A183VWL0	A0A183WEP1	A0A183VWL0	A0A183WEP1	Uncharacterized protein.	Uncharacterized protein.	0.980
A0A183VWL0	A0A183WR35	A0A183VWL0	A0A183WR35	Uncharacterized protein.	Uncharacterized protein.	0.980
A0A183VWL0	A0A183X333	A0A183VWL0	A0A183X333	Uncharacterized protein.	Guanylate kinase-like domain-containing protein.	0.754
A0A183VWL0	TRE_LOCUS11867	A0A183VWL0	A0A183WIB3	Uncharacterized protein.	Uncharacterized protein.	0.991
A0A183VWL0	TRE_LOCUS18866	A0A183VWL0	A0A183X3B3	Uncharacterized protein.	NDK domain-containing protein.	0.968
A0A183VWL0	TRE_LOCUS19984	A0A183VWL0	A0A183X6I0	Uncharacterized protein.	Uncharacterized protein.	0.980
A0A183VWL0	TRE_LOCUS21315	A0A183VWL0	A0A183XAB2	Uncharacterized protein.	Uncharacterized protein.	0.968
A0A183VWL0	TRE_LOCUS5623	A0A183VWL0	A0A183VYR7	Uncharacterized protein.	Uncharacterized protein.	0.980
A0A183VWL0	TRE_LOCUS9505	A0A183VWL0	A0A183WBK2	Uncharacterized protein.	Uncharacterized protein.	0.980
A0A183WEP1	A0A183VWL0	A0A183WEP1	A0A183VWL0	Uncharacterized protein.	Uncharacterized protein.	0.980
A0A183WEP1	A0A183WR35	A0A183WEP1	A0A183WR35	Uncharacterized protein.	Uncharacterized protein.	0.913
A0A183WEP1	A0A183X333	A0A183WEP1	A0A183X333	Uncharacterized protein.	Guanylate kinase-like domain-containing protein.	0.980
A0A183WEP1	TRE_LOCUS11867	A0A183WEP1	A0A183WIB3	Uncharacterized protein.	Uncharacterized protein.	0.996
A0A183WEP1	TRE_LOCUS18866	A0A183WEP1	A0A183X3B3	Uncharacterized protein.	NDK domain-containing protein.	0.970
A0A183WEP1	TRE_LOCUS19984	A0A183WEP1	A0A183X6I0	Uncharacterized protein.	Uncharacterized protein.	0.960
A0A183WEP1	TRE_LOCUS21315	A0A183WEP1	A0A183XAB2	Uncharacterized protein.	Uncharacterized protein.	0.970
A0A183WEP1	TRE_LOCUS5623	A0A183WEP1	A0A183VYR7	Uncharacterized protein.	Uncharacterized protein.	0.879
A0A183WEP1	TRE_LOCUS9505	A0A183WEP1	A0A183WBK2	Uncharacterized protein.	Uncharacterized protein.	0.956
A0A183WR35	A0A183VWL0	A0A183WR35	A0A183VWL0	Uncharacterized protein.	Uncharacterized protein.	0.980
A0A183WR35	A0A183WEP1	A0A183WR35	A0A183WEP1	Uncharacterized protein.	Uncharacterized protein.	0.913