(22 nodes) Mixed, incl. Gamma-secretase complex, and Neuron migration network (Trichobilharzia regenti)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TRE_LOCUS1348	Uncharacterized protein. (312 aa)
	TRE_LOCUS764	Uncharacterized protein. (69 aa)
	TRE_LOCUS2171	Uncharacterized protein. (330 aa)
	TRE_LOCUS2468	Uncharacterized protein. (448 aa)
	TRE_LOCUS3224	Uncharacterized protein. (691 aa)
	A0A183W3C9	Disintegrin domain-containing protein. (88 aa)
	TRE_LOCUS21825	CA domain-containing protein. (217 aa)
	TRE_LOCUS7884	Uncharacterized protein. (394 aa)
	TRE_LOCUS10896	Phtf-FEM1B_bdg domain-containing protein. (352 aa)
	TRE_LOCUS12136	Uncharacterized protein. (501 aa)
	A0A183WKG6	CA domain-containing protein. (184 aa)
	A0A183WLJ2	Uncharacterized protein. (412 aa)
	TRE_LOCUS13499	Uncharacterized protein. (226 aa)
	A0A183WWK1	Ncstrn_small domain-containing protein. (266 aa)
	TRE_LOCUS16750	Uncharacterized protein. (114 aa)
	A0A183WYJ5	Uncharacterized protein. (89 aa)
	TRE_LOCUS18189	Uncharacterized protein. (75 aa)
	TRE_LOCUS19010	Uncharacterized protein. (96 aa)
	A0A183X3X0	Uncharacterized protein. (156 aa)
	TRE_LOCUS19842	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family. (151 aa)
	A0A183X736	Uncharacterized protein. (91 aa)
	TRE_LOCUS20572	EGF_CA domain-containing protein. (82 aa)

Your Current Organism:

Trichobilharzia regenti

NCBI taxonomy Id: 157069
Other names: T. regenti, bird nasal schistosome

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A183W3C9	A0A183WKG6	A0A183W3C9	A0A183WKG6	Disintegrin domain-containing protein.	CA domain-containing protein.	0.662
A0A183W3C9	A0A183WLJ2	A0A183W3C9	A0A183WLJ2	Disintegrin domain-containing protein.	Uncharacterized protein.	0.576
A0A183W3C9	A0A183WWK1	A0A183W3C9	A0A183WWK1	Disintegrin domain-containing protein.	Ncstrn_small domain-containing protein.	0.484
A0A183W3C9	A0A183X3X0	A0A183W3C9	A0A183X3X0	Disintegrin domain-containing protein.	Uncharacterized protein.	0.576
A0A183W3C9	TRE_LOCUS10896	A0A183W3C9	A0A183WFJ4	Disintegrin domain-containing protein.	Phtf-FEM1B_bdg domain-containing protein.	0.576
A0A183W3C9	TRE_LOCUS12136	A0A183W3C9	A0A183WJ32	Disintegrin domain-containing protein.	Uncharacterized protein.	0.569
A0A183W3C9	TRE_LOCUS1348	A0A183W3C9	A0A183VJ04	Disintegrin domain-containing protein.	Uncharacterized protein.	0.662
A0A183W3C9	TRE_LOCUS19010	A0A183W3C9	A0A183X3Q7	Disintegrin domain-containing protein.	Uncharacterized protein.	0.482
A0A183W3C9	TRE_LOCUS20572	A0A183W3C9	A0A183X869	Disintegrin domain-containing protein.	EGF_CA domain-containing protein.	0.569
A0A183W3C9	TRE_LOCUS2171	A0A183W3C9	A0A183VNW5	Disintegrin domain-containing protein.	Uncharacterized protein.	0.569
A0A183W3C9	TRE_LOCUS21825	A0A183W3C9	A0A183W483	Disintegrin domain-containing protein.	CA domain-containing protein.	0.662
A0A183W3C9	TRE_LOCUS2468	A0A183W3C9	A0A183VPR2	Disintegrin domain-containing protein.	Uncharacterized protein.	0.662
A0A183W3C9	TRE_LOCUS3224	A0A183W3C9	A0A183VRW8	Disintegrin domain-containing protein.	Uncharacterized protein.	0.662
A0A183W3C9	TRE_LOCUS7884	A0A183W3C9	A0A183W6K4	Disintegrin domain-containing protein.	Uncharacterized protein.	0.847
A0A183WKG6	A0A183W3C9	A0A183WKG6	A0A183W3C9	CA domain-containing protein.	Disintegrin domain-containing protein.	0.662
A0A183WKG6	A0A183WLJ2	A0A183WKG6	A0A183WLJ2	CA domain-containing protein.	Uncharacterized protein.	0.408
A0A183WKG6	A0A183WWK1	A0A183WKG6	A0A183WWK1	CA domain-containing protein.	Ncstrn_small domain-containing protein.	0.688
A0A183WKG6	A0A183WYJ5	A0A183WKG6	A0A183WYJ5	CA domain-containing protein.	Uncharacterized protein.	0.733
A0A183WKG6	A0A183X3X0	A0A183WKG6	A0A183X3X0	CA domain-containing protein.	Uncharacterized protein.	0.408
A0A183WKG6	A0A183X736	A0A183WKG6	A0A183X736	CA domain-containing protein.	Uncharacterized protein.	0.688