(5 nodes) Mixed, incl. ER ubiquitin ligase complex, and 1-acylglycerol-3-phosphate O-acyltransferase activity network (Trichobilharzia regenti)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A183VUT2	Uncharacterized protein. (340 aa)
	TRE_LOCUS5063	Uncharacterized protein. (225 aa)
	A0A183W8A6	Uncharacterized protein. (304 aa)
	TRE_LOCUS15627	Uncharacterized protein. (114 aa)
	TRE_LOCUS16496	Uncharacterized protein. (136 aa)

Your Current Organism:

Trichobilharzia regenti

NCBI taxonomy Id: 157069
Other names: T. regenti, bird nasal schistosome

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A183VUT2	A0A183W8A6	A0A183VUT2	A0A183W8A6	Uncharacterized protein.	Uncharacterized protein.	0.888
A0A183VUT2	TRE_LOCUS15627	A0A183VUT2	A0A183WU23	Uncharacterized protein.	Uncharacterized protein.	0.563
A0A183VUT2	TRE_LOCUS16496	A0A183VUT2	A0A183WWJ3	Uncharacterized protein.	Uncharacterized protein.	0.610
A0A183VUT2	TRE_LOCUS5063	A0A183VUT2	A0A183VX57	Uncharacterized protein.	Uncharacterized protein.	0.714
A0A183W8A6	A0A183VUT2	A0A183W8A6	A0A183VUT2	Uncharacterized protein.	Uncharacterized protein.	0.888
A0A183W8A6	TRE_LOCUS15627	A0A183W8A6	A0A183WU23	Uncharacterized protein.	Uncharacterized protein.	0.665
A0A183W8A6	TRE_LOCUS16496	A0A183W8A6	A0A183WWJ3	Uncharacterized protein.	Uncharacterized protein.	0.762
A0A183W8A6	TRE_LOCUS5063	A0A183W8A6	A0A183VX57	Uncharacterized protein.	Uncharacterized protein.	0.811
TRE_LOCUS15627	A0A183VUT2	A0A183WU23	A0A183VUT2	Uncharacterized protein.	Uncharacterized protein.	0.563
TRE_LOCUS15627	A0A183W8A6	A0A183WU23	A0A183W8A6	Uncharacterized protein.	Uncharacterized protein.	0.665
TRE_LOCUS15627	TRE_LOCUS16496	A0A183WU23	A0A183WWJ3	Uncharacterized protein.	Uncharacterized protein.	0.437
TRE_LOCUS15627	TRE_LOCUS5063	A0A183WU23	A0A183VX57	Uncharacterized protein.	Uncharacterized protein.	0.552
TRE_LOCUS16496	A0A183VUT2	A0A183WWJ3	A0A183VUT2	Uncharacterized protein.	Uncharacterized protein.	0.610
TRE_LOCUS16496	A0A183W8A6	A0A183WWJ3	A0A183W8A6	Uncharacterized protein.	Uncharacterized protein.	0.762
TRE_LOCUS16496	TRE_LOCUS15627	A0A183WWJ3	A0A183WU23	Uncharacterized protein.	Uncharacterized protein.	0.437
TRE_LOCUS16496	TRE_LOCUS5063	A0A183WWJ3	A0A183VX57	Uncharacterized protein.	Uncharacterized protein.	0.528
TRE_LOCUS5063	A0A183VUT2	A0A183VX57	A0A183VUT2	Uncharacterized protein.	Uncharacterized protein.	0.714
TRE_LOCUS5063	A0A183W8A6	A0A183VX57	A0A183W8A6	Uncharacterized protein.	Uncharacterized protein.	0.811
TRE_LOCUS5063	TRE_LOCUS15627	A0A183VX57	A0A183WU23	Uncharacterized protein.	Uncharacterized protein.	0.552
TRE_LOCUS5063	TRE_LOCUS16496	A0A183VX57	A0A183WWJ3	Uncharacterized protein.	Uncharacterized protein.	0.528