(12 nodes) Mixed, incl. Small GTPase Rho, and Sarcomere organization network (Trichobilharzia regenti)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TRE_LOCUS4067	Uncharacterized protein. (145 aa)
	TRE_LOCUS4458	Uncharacterized protein. (206 aa)
	TRE_LOCUS5199	Uncharacterized protein. (88 aa)
	TRE_LOCUS5465	Uncharacterized protein. (387 aa)
	TRE_LOCUS5537	Uncharacterized protein. (376 aa)
	TRE_LOCUS5916	Uncharacterized protein. (93 aa)
	A0A183W053	Uncharacterized protein. (164 aa)
	TRE_LOCUS11791	Protein kinase domain-containing protein. (294 aa)
	A0A183WLW7	Uncharacterized protein. (45 aa)
	A0A183WME4	Uncharacterized protein. (223 aa)
	A0A183WUJ0	Uncharacterized protein. (203 aa)
	TRE_LOCUS18116	Protein kinase domain-containing protein. (81 aa)

Your Current Organism:

Trichobilharzia regenti

NCBI taxonomy Id: 157069
Other names: T. regenti, bird nasal schistosome

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A183W053	A0A183WLW7	A0A183W053	A0A183WLW7	Uncharacterized protein.	Uncharacterized protein.	0.857
A0A183W053	A0A183WME4	A0A183W053	A0A183WME4	Uncharacterized protein.	Uncharacterized protein.	0.721
A0A183W053	A0A183WUJ0	A0A183W053	A0A183WUJ0	Uncharacterized protein.	Uncharacterized protein.	0.857
A0A183W053	TRE_LOCUS11791	A0A183W053	A0A183WI38	Uncharacterized protein.	Protein kinase domain-containing protein.	0.912
A0A183W053	TRE_LOCUS18116	A0A183W053	A0A183X163	Uncharacterized protein.	Protein kinase domain-containing protein.	0.678
A0A183W053	TRE_LOCUS4067	A0A183W053	A0A183VUB1	Uncharacterized protein.	Uncharacterized protein.	0.713
A0A183W053	TRE_LOCUS4458	A0A183W053	A0A183VVF2	Uncharacterized protein.	Uncharacterized protein.	0.981
A0A183W053	TRE_LOCUS5465	A0A183W053	A0A183VYA9	Uncharacterized protein.	Uncharacterized protein.	0.981
A0A183W053	TRE_LOCUS5537	A0A183W053	A0A183VYI1	Uncharacterized protein.	Uncharacterized protein.	0.981
A0A183WLW7	A0A183W053	A0A183WLW7	A0A183W053	Uncharacterized protein.	Uncharacterized protein.	0.857
A0A183WLW7	TRE_LOCUS11791	A0A183WLW7	A0A183WI38	Uncharacterized protein.	Protein kinase domain-containing protein.	0.546
A0A183WLW7	TRE_LOCUS18116	A0A183WLW7	A0A183X163	Uncharacterized protein.	Protein kinase domain-containing protein.	0.691
A0A183WLW7	TRE_LOCUS4458	A0A183WLW7	A0A183VVF2	Uncharacterized protein.	Uncharacterized protein.	0.882
A0A183WLW7	TRE_LOCUS5199	A0A183WLW7	A0A183VXJ2	Uncharacterized protein.	Uncharacterized protein.	0.721
A0A183WLW7	TRE_LOCUS5465	A0A183WLW7	A0A183VYA9	Uncharacterized protein.	Uncharacterized protein.	0.882
A0A183WLW7	TRE_LOCUS5537	A0A183WLW7	A0A183VYI1	Uncharacterized protein.	Uncharacterized protein.	0.882
A0A183WLW7	TRE_LOCUS5916	A0A183WLW7	A0A183VZL0	Uncharacterized protein.	Uncharacterized protein.	0.721
A0A183WME4	A0A183W053	A0A183WME4	A0A183W053	Uncharacterized protein.	Uncharacterized protein.	0.721
A0A183WME4	TRE_LOCUS11791	A0A183WME4	A0A183WI38	Uncharacterized protein.	Protein kinase domain-containing protein.	0.464
A0A183WME4	TRE_LOCUS18116	A0A183WME4	A0A183X163	Uncharacterized protein.	Protein kinase domain-containing protein.	0.506