(13 nodes) Catenin complex network (Trichobilharzia regenti)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TRE_LOCUS17356	Uncharacterized protein. (183 aa)
	TRE_LOCUS13147	Uncharacterized protein. (182 aa)
	A0A183WHE0	Uncharacterized protein. (153 aa)
	A0A183WG20	Uncharacterized protein. (120 aa)
	TRE_LOCUS9582	Uncharacterized protein. (317 aa)
	TRE_LOCUS7672	Uncharacterized protein. (618 aa)
	TRE_LOCUS21946	Uncharacterized protein. (78 aa)
	TRE_LOCUS1460	Uncharacterized protein. (162 aa)
	A0A183VJS4	Uncharacterized protein. (203 aa)
	TRE_LOCUS21037	Uncharacterized protein. (61 aa)
	A0A183WZL5	Uncharacterized protein. (88 aa)
	TRE_LOCUS15449	Uncharacterized protein. (138 aa)
	TRE_LOCUS21582	Uncharacterized protein. (76 aa)

Your Current Organism:

Trichobilharzia regenti

NCBI taxonomy Id: 157069
Other names: T. regenti, bird nasal schistosome

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A183VJS4	A0A183WG20	A0A183VJS4	A0A183WG20	Uncharacterized protein.	Uncharacterized protein.	0.896
A0A183VJS4	A0A183WZL5	A0A183VJS4	A0A183WZL5	Uncharacterized protein.	Uncharacterized protein.	0.896
A0A183VJS4	TRE_LOCUS13147	A0A183VJS4	A0A183WLZ4	Uncharacterized protein.	Uncharacterized protein.	0.985
A0A183VJS4	TRE_LOCUS1460	A0A183VJS4	A0A183VLV4	Uncharacterized protein.	Uncharacterized protein.	0.985
A0A183VJS4	TRE_LOCUS15449	A0A183VJS4	A0A183WTJ6	Uncharacterized protein.	Uncharacterized protein.	0.896
A0A183VJS4	TRE_LOCUS17356	A0A183VJS4	A0A183WZ04	Uncharacterized protein.	Uncharacterized protein.	0.896
A0A183VJS4	TRE_LOCUS21037	A0A183VJS4	A0A183X9I4	Uncharacterized protein.	Uncharacterized protein.	0.896
A0A183VJS4	TRE_LOCUS21582	A0A183VJS4	A0A183XB29	Uncharacterized protein.	Uncharacterized protein.	0.896
A0A183VJS4	TRE_LOCUS21946	A0A183VJS4	A0A183W5D2	Uncharacterized protein.	Uncharacterized protein.	0.896
A0A183VJS4	TRE_LOCUS7672	A0A183VJS4	A0A183W5R7	Uncharacterized protein.	Uncharacterized protein.	0.474
A0A183VJS4	TRE_LOCUS9582	A0A183VJS4	A0A183WBS9	Uncharacterized protein.	Uncharacterized protein.	0.985
A0A183WG20	A0A183VJS4	A0A183WG20	A0A183VJS4	Uncharacterized protein.	Uncharacterized protein.	0.896
A0A183WG20	A0A183WHE0	A0A183WG20	A0A183WHE0	Uncharacterized protein.	Uncharacterized protein.	0.896
A0A183WG20	TRE_LOCUS17356	A0A183WG20	A0A183WZ04	Uncharacterized protein.	Uncharacterized protein.	0.411
A0A183WG20	TRE_LOCUS7672	A0A183WG20	A0A183W5R7	Uncharacterized protein.	Uncharacterized protein.	0.896
A0A183WHE0	A0A183WG20	A0A183WHE0	A0A183WG20	Uncharacterized protein.	Uncharacterized protein.	0.896
A0A183WHE0	A0A183WZL5	A0A183WHE0	A0A183WZL5	Uncharacterized protein.	Uncharacterized protein.	0.896
A0A183WHE0	TRE_LOCUS13147	A0A183WHE0	A0A183WLZ4	Uncharacterized protein.	Uncharacterized protein.	0.985
A0A183WHE0	TRE_LOCUS1460	A0A183WHE0	A0A183VLV4	Uncharacterized protein.	Uncharacterized protein.	0.985
A0A183WHE0	TRE_LOCUS15449	A0A183WHE0	A0A183WTJ6	Uncharacterized protein.	Uncharacterized protein.	0.896