(80 nodes) Protein processing network (Trichobilharzia regenti)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TRE_LOCUS17090	CUB domain-containing protein. (131 aa)
	TRE_LOCUS16750	Uncharacterized protein. (114 aa)
	A0A183WX26	Peptidase_M13 domain-containing protein. (78 aa)
	A0A183WWK1	Ncstrn_small domain-containing protein. (266 aa)
	TRE_LOCUS16501	CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family. (450 aa)
	A0A183WVQ8	Uncharacterized protein. (95 aa)
	TRE_LOCUS16076	Peptidase_M13_N domain-containing protein. (91 aa)
	A0A183WUK5	Peptidase_M24 domain-containing protein. (222 aa)
	TRE_LOCUS15697	Uncharacterized protein. (106 aa)
	TRE_LOCUS15690	Rhomboid domain-containing protein. (153 aa)
	A0A183WU42	Uncharacterized protein. (93 aa)
	TRE_LOCUS15638	Uncharacterized protein. (188 aa)
	TRE_LOCUS15319	Peptidase_M3 domain-containing protein. (117 aa)
	A0A183WRD9	Uncharacterized protein. (49 aa)
	TRE_LOCUS13958	Uncharacterized protein. (231 aa)
	TRE_LOCUS13836	Peptidase_M16_C domain-containing protein. (153 aa)
	TRE_LOCUS13499	Uncharacterized protein. (226 aa)
	A0A183WMD7	Uncharacterized protein. (86 aa)
	A0A183WLH6	Peptidase_M3 domain-containing protein. (279 aa)
	A0A183WKZ0	Uncharacterized protein. (53 aa)
	TRE_LOCUS12586	Peptidase_S8 domain-containing protein. (184 aa)
	A0A183WK97	Uncharacterized protein. (330 aa)
	A0A183WK86	Band_7_C domain-containing protein. (148 aa)
	A0A183WJ41	Uncharacterized protein. (117 aa)
	A0A183WIC0	Uncharacterized protein. (145 aa)
	TRE_LOCUS11127	NB-ARC domain-containing protein. (253 aa)
	TRE_LOCUS10961	Peptidase_M3 domain-containing protein. (232 aa)
	TRE_LOCUS10203	Signal peptidase complex subunit 3. (160 aa)
	TRE_LOCUS8233	Uncharacterized protein. (327 aa)
	TRE_LOCUS8054	Uncharacterized protein. (104 aa)
	TRE_LOCUS7929	Uncharacterized protein. (161 aa)
	TRE_LOCUS7642	P/Homo B domain-containing protein. (132 aa)
	TRE_LOCUS308	Peptidase_M3 domain-containing protein. (99 aa)
	A0A183XA49	Uncharacterized protein. (35 aa)
	A0A183X9J6	Uncharacterized protein. (77 aa)
	TRE_LOCUS20696	Uncharacterized protein. (116 aa)
	A0A183X7N4	Peptidase_M13 domain-containing protein. (83 aa)
	A0A183X7J4	Uncharacterized protein. (75 aa)
	A0A183X736	Uncharacterized protein. (91 aa)
	TRE_LOCUS19891	Uncharacterized protein. (168 aa)
	TRE_LOCUS19842	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family. (151 aa)
	TRE_LOCUS19609	Peptidase_M13_N domain-containing protein. (426 aa)
	A0A183X561	CUB domain-containing protein. (86 aa)
	TRE_LOCUS19479	SprT-like domain-containing protein. (224 aa)
	TRE_LOCUS19359	Uncharacterized protein. (103 aa)
	TRE_LOCUS18907	Uncharacterized protein. (125 aa)
	TRE_LOCUS18483	Uncharacterized protein. (110 aa)
	TRE_LOCUS18472	Uncharacterized protein. (213 aa)
	A0A183X1L0	Uncharacterized protein. (151 aa)
	TRE_LOCUS18189	Uncharacterized protein. (75 aa)
	TRE_LOCUS17858	Uncharacterized protein. (200 aa)
	TRE_LOCUS17730	CUB domain-containing protein. (297 aa)
	A0A183WYJ5	Uncharacterized protein. (89 aa)
	TRE_LOCUS22	M16C_associated domain-containing protein. (266 aa)
	TRE_LOCUS34	Uncharacterized protein. (118 aa)
	TRE_LOCUS567	TPR_REGION domain-containing protein. (752 aa)
	TRE_LOCUS638	TPR_REGION domain-containing protein. (205 aa)
	TRE_LOCUS764	Uncharacterized protein. (69 aa)
	TRE_LOCUS1791	Uncharacterized protein. (94 aa)
	TRE_LOCUS3011	Peptidase A1 domain-containing protein. (226 aa)
	A0A183VRD9	Uncharacterized protein; Belongs to the peptidase C14A family. (606 aa)
	TRE_LOCUS3168	Uncharacterized protein. (189 aa)
	A0A183VRZ5	Uncharacterized protein. (555 aa)
	TRE_LOCUS3905	Uncharacterized protein. (361 aa)
	TRE_LOCUS4181	Peptidase_M14 domain-containing protein. (192 aa)
	A0A183VUM6	Uncharacterized protein. (171 aa)
	TRE_LOCUS4262	AAA domain-containing protein; Belongs to the AAA ATPase family. (516 aa)
	TRE_LOCUS4631	CUB domain-containing protein. (110 aa)
	TRE_LOCUS4863	AMP_N domain-containing protein. (451 aa)
	TRE_LOCUS5356	Uncharacterized protein. (174 aa)
	TRE_LOCUS5651	Reverse transcriptase domain-containing protein. (192 aa)
	TRE_LOCUS5743	Uncharacterized protein. (74 aa)
	A0A183VZI3	Uncharacterized protein. (146 aa)
	TRE_LOCUS5971	P/Homo B domain-containing protein. (76 aa)
	TRE_LOCUS6232	Uncharacterized protein. (157 aa)
	TRE_LOCUS6341	Uncharacterized protein. (119 aa)
	TRE_LOCUS6401	Uncharacterized protein. (117 aa)
	TRE_LOCUS6946	Uncharacterized protein; Belongs to the peptidase S8 family. (537 aa)
	TRE_LOCUS21725	Peptidase_S8 domain-containing protein. (73 aa)
	A0A183W3R3	Uncharacterized protein. (38 aa)

Your Current Organism:

Trichobilharzia regenti

NCBI taxonomy Id: 157069
Other names: T. regenti, bird nasal schistosome

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A183VRD9	A0A183WRD9	A0A183VRD9	A0A183WRD9	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.708
A0A183VRD9	TRE_LOCUS11127	A0A183VRD9	A0A183WG74	Uncharacterized protein; Belongs to the peptidase C14A family.	NB-ARC domain-containing protein.	0.864
A0A183VRD9	TRE_LOCUS12586	A0A183VRD9	A0A183WKD3	Uncharacterized protein; Belongs to the peptidase C14A family.	Peptidase_S8 domain-containing protein.	0.408
A0A183VRD9	TRE_LOCUS21725	A0A183VRD9	A0A183W3E4	Uncharacterized protein; Belongs to the peptidase C14A family.	Peptidase_S8 domain-containing protein.	0.408
A0A183VRD9	TRE_LOCUS3168	A0A183VRD9	A0A183VRR2	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.408
A0A183VRD9	TRE_LOCUS3905	A0A183VRD9	A0A183VTU9	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.408
A0A183VRD9	TRE_LOCUS5971	A0A183VRD9	A0A183VZR6	Uncharacterized protein; Belongs to the peptidase C14A family.	P/Homo B domain-containing protein.	0.510
A0A183VRD9	TRE_LOCUS6341	A0A183VRD9	A0A183W0T5	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.408
A0A183VRD9	TRE_LOCUS6401	A0A183VRD9	A0A183W0Z6	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.408
A0A183VRD9	TRE_LOCUS6946	A0A183VRD9	A0A183W2L8	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein; Belongs to the peptidase S8 family.	0.510
A0A183VRD9	TRE_LOCUS7642	A0A183VRD9	A0A183W5M4	Uncharacterized protein; Belongs to the peptidase C14A family.	P/Homo B domain-containing protein.	0.408
A0A183VRZ5	A0A183WJ41	A0A183VRZ5	A0A183WJ41	Uncharacterized protein.	Uncharacterized protein.	0.682
A0A183VRZ5	A0A183WUK5	A0A183VRZ5	A0A183WUK5	Uncharacterized protein.	Peptidase_M24 domain-containing protein.	0.682
A0A183VRZ5	A0A183X9J6	A0A183VRZ5	A0A183X9J6	Uncharacterized protein.	Uncharacterized protein.	0.682
A0A183VRZ5	TRE_LOCUS18907	A0A183VRZ5	A0A183X3F5	Uncharacterized protein.	Uncharacterized protein.	0.682
A0A183VRZ5	TRE_LOCUS20696	A0A183VRZ5	A0A183X8J4	Uncharacterized protein.	Uncharacterized protein.	0.682
A0A183W3R3	A0A183X7J4	A0A183W3R3	A0A183X7J4	Uncharacterized protein.	Uncharacterized protein.	0.463
A0A183W3R3	TRE_LOCUS13958	A0A183W3R3	A0A183WPA4	Uncharacterized protein.	Uncharacterized protein.	0.450
A0A183WIC0	TRE_LOCUS13836	A0A183WIC0	A0A183WNY4	Uncharacterized protein.	Peptidase_M16_C domain-containing protein.	0.546
A0A183WIC0	TRE_LOCUS22	A0A183WIC0	A0A183VJ38	Uncharacterized protein.	M16C_associated domain-containing protein.	0.531