(44 nodes) Cytosolic large ribosomal subunit network (Trichobilharzia regenti)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TRE_LOCUS6976	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (204 aa)
	TRE_LOCUS898	Ribosomal_L7Ae domain-containing protein. (117 aa)
	TRE_LOCUS1235	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family. (66 aa)
	TRE_LOCUS128	Uncharacterized protein. (122 aa)
	TRE_LOCUS1649	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (70 aa)
	TRE_LOCUS2941	Uncharacterized protein. (643 aa)
	TRE_LOCUS4352	Uncharacterized protein. (557 aa)
	TRE_LOCUS4635	Uncharacterized protein. (331 aa)
	TRE_LOCUS4857	Uncharacterized protein. (132 aa)
	TRE_LOCUS5255	Ribosomal_L7Ae domain-containing protein. (239 aa)
	A0A183W145	Uncharacterized protein. (170 aa)
	TRE_LOCUS6723	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family. (113 aa)
	A0A183W2Z7	Uncharacterized protein. (205 aa)
	TRE_LOCUS7244	Uncharacterized protein. (122 aa)
	A0A183W4K8	Uncharacterized protein. (252 aa)
	A0A183W6J0	Uncharacterized protein. (160 aa)
	TRE_LOCUS8520	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family. (115 aa)
	TRE_LOCUS9385	Ribosomal_L18_c domain-containing protein. (296 aa)
	TRE_LOCUS9414	Uncharacterized protein. (131 aa)
	A0A183WBS1	Uncharacterized protein. (88 aa)
	TRE_LOCUS9802	Ribosomal_L14e domain-containing protein. (107 aa)
	TRE_LOCUS9995	Ribosomal_L23eN domain-containing protein. (184 aa)
	A0A183WDI3	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family. (158 aa)
	TRE_LOCUS10297	Uncharacterized protein. (113 aa)
	TRE_LOCUS10970	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (165 aa)
	TRE_LOCUS11931	Uncharacterized protein. (179 aa)
	TRE_LOCUS13009	Uncharacterized protein. (217 aa)
	TRE_LOCUS13333	Ubiquitin-like domain-containing protein. (142 aa)
	TRE_LOCUS13940	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family. (106 aa)
	TRE_LOCUS14307	Uncharacterized protein. (76 aa)
	TRE_LOCUS14444	Ribos_L4_asso_C domain-containing protein. (336 aa)
	TRE_LOCUS14638	Uncharacterized protein. (121 aa)
	TRE_LOCUS14792	Uncharacterized protein. (122 aa)
	TRE_LOCUS15091	Uncharacterized protein. (186 aa)
	TRE_LOCUS15705	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (294 aa)
	A0A183WUU4	Ribosomal_L19e domain-containing protein. (139 aa)
	A0A183WW46	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family. (243 aa)
	TRE_LOCUS16534	Ribosomal_L16 domain-containing protein. (71 aa)
	TRE_LOCUS17231	Ribosomal_L2_C domain-containing protein. (270 aa)
	TRE_LOCUS17305	Uncharacterized protein. (83 aa)
	A0A183X248	Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family. (138 aa)
	TRE_LOCUS19812	Uncharacterized protein. (99 aa)
	TRE_LOCUS21513	Ribosomal_L28e domain-containing protein. (129 aa)
	A0A183XB15	Uncharacterized protein. (44 aa)

Your Current Organism:

Trichobilharzia regenti

NCBI taxonomy Id: 157069
Other names: T. regenti, bird nasal schistosome

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A183W145	A0A183W2Z7	A0A183W145	A0A183W2Z7	Uncharacterized protein.	Uncharacterized protein.	0.996
A0A183W145	A0A183W4K8	A0A183W145	A0A183W4K8	Uncharacterized protein.	Uncharacterized protein.	0.997
A0A183W145	A0A183W6J0	A0A183W145	A0A183W6J0	Uncharacterized protein.	Uncharacterized protein.	0.996
A0A183W145	A0A183WBS1	A0A183W145	A0A183WBS1	Uncharacterized protein.	Uncharacterized protein.	0.997
A0A183W145	A0A183WUU4	A0A183W145	A0A183WUU4	Uncharacterized protein.	Ribosomal_L19e domain-containing protein.	0.996
A0A183W145	A0A183WW46	A0A183W145	A0A183WW46	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.996
A0A183W145	A0A183X248	A0A183W145	A0A183X248	Uncharacterized protein.	Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family.	0.996
A0A183W145	A0A183XB15	A0A183W145	A0A183XB15	Uncharacterized protein.	Uncharacterized protein.	0.991
A0A183W145	TRE_LOCUS10297	A0A183W145	A0A183WDU4	Uncharacterized protein.	Uncharacterized protein.	0.996
A0A183W145	TRE_LOCUS10970	A0A183W145	A0A183WFR7	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	0.996
A0A183W145	TRE_LOCUS11931	A0A183W145	A0A183WIH7	Uncharacterized protein.	Uncharacterized protein.	0.991
A0A183W145	TRE_LOCUS1235	A0A183W145	A0A183VIN8	Uncharacterized protein.	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.	0.990
A0A183W145	TRE_LOCUS128	A0A183W145	A0A183VJE4	Uncharacterized protein.	Uncharacterized protein.	0.996
A0A183W145	TRE_LOCUS13009	A0A183W145	A0A183WLK6	Uncharacterized protein.	Uncharacterized protein.	0.996
A0A183W145	TRE_LOCUS13333	A0A183W145	A0A183WMI0	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.995
A0A183W145	TRE_LOCUS13940	A0A183W145	A0A183WP87	Uncharacterized protein.	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family.	0.992
A0A183W145	TRE_LOCUS14444	A0A183W145	A0A183WQP3	Uncharacterized protein.	Ribos_L4_asso_C domain-containing protein.	0.991
A0A183W145	TRE_LOCUS14638	A0A183W145	A0A183WR84	Uncharacterized protein.	Uncharacterized protein.	0.988
A0A183W145	TRE_LOCUS14792	A0A183W145	A0A183WRN7	Uncharacterized protein.	Uncharacterized protein.	0.996
A0A183W145	TRE_LOCUS15091	A0A183W145	A0A183WSI7	Uncharacterized protein.	Uncharacterized protein.	0.996