(72 nodes) Cytosolic ribosome network (Trichobilharzia regenti)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TRE_LOCUS13995	Uncharacterized protein. (191 aa)
	TRE_LOCUS13333	Ubiquitin-like domain-containing protein. (142 aa)
	TRE_LOCUS13016	Uncharacterized protein. (134 aa)
	TRE_LOCUS13009	Uncharacterized protein. (217 aa)
	TRE_LOCUS12985	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (132 aa)
	TRE_LOCUS12677	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (114 aa)
	TRE_LOCUS12492	Uncharacterized protein. (56 aa)
	TRE_LOCUS12240	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (101 aa)
	A0A183WIU6	Ribosomal_S10 domain-containing protein. (70 aa)
	TRE_LOCUS11931	Uncharacterized protein. (179 aa)
	A0A183WI48	Uncharacterized protein. (35 aa)
	TRE_LOCUS10970	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family. (165 aa)
	A0A183WE07	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (255 aa)
	TRE_LOCUS10297	Uncharacterized protein. (113 aa)
	A0A183WDI3	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family. (158 aa)
	TRE_LOCUS9995	Ribosomal_L23eN domain-containing protein. (184 aa)
	TRE_LOCUS9891	Ribosomal_S13_N domain-containing protein; Belongs to the universal ribosomal protein uS15 family. (151 aa)
	TRE_LOCUS9802	Ribosomal_L14e domain-containing protein. (107 aa)
	A0A183WBS1	Uncharacterized protein. (88 aa)
	TRE_LOCUS9414	Uncharacterized protein. (131 aa)
	TRE_LOCUS9385	Ribosomal_L18_c domain-containing protein. (296 aa)
	TRE_LOCUS9369	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (282 aa)
	A0A183W7Y9	Uncharacterized protein. (127 aa)
	TRE_LOCUS7919	Uncharacterized protein. (61 aa)
	A0A183W6J0	Uncharacterized protein. (160 aa)
	A0A183W4K8	Uncharacterized protein. (252 aa)
	TRE_LOCUS7244	Uncharacterized protein. (122 aa)
	A0A183W2Z7	Uncharacterized protein. (205 aa)
	TRE_LOCUS6976	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (204 aa)
	TRE_LOCUS6723	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family. (113 aa)
	A0A183W145	Uncharacterized protein. (170 aa)
	A0A183VZM2	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (174 aa)
	TRE_LOCUS5908	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family. (192 aa)
	TRE_LOCUS5814	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (259 aa)
	TRE_LOCUS5255	Ribosomal_L7Ae domain-containing protein. (239 aa)
	TRE_LOCUS4857	Uncharacterized protein. (132 aa)
	TRE_LOCUS4738	SWIB domain-containing protein. (202 aa)
	TRE_LOCUS4635	Uncharacterized protein. (331 aa)
	TRE_LOCUS4488	eIF2A domain-containing protein. (116 aa)
	TRE_LOCUS4352	Uncharacterized protein. (557 aa)
	TRE_LOCUS4201	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (246 aa)
	TRE_LOCUS3982	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (81 aa)
	TRE_LOCUS3968	Uncharacterized protein; Belongs to the universal ribosomal protein uS3 family. (228 aa)
	TRE_LOCUS2941	Uncharacterized protein. (643 aa)
	TRE_LOCUS2192	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family. (145 aa)
	TRE_LOCUS1649	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (70 aa)
	TRE_LOCUS128	Uncharacterized protein. (122 aa)
	TRE_LOCUS1235	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family. (66 aa)
	TRE_LOCUS898	Ribosomal_L7Ae domain-containing protein. (117 aa)
	TRE_LOCUS8520	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family. (115 aa)
	TRE_LOCUS9017	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family. (194 aa)
	A0A183WAE7	Uncharacterized protein. (120 aa)
	A0A183XB15	Uncharacterized protein. (44 aa)
	TRE_LOCUS21513	Ribosomal_L28e domain-containing protein. (129 aa)
	TRE_LOCUS21250	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (123 aa)
	TRE_LOCUS19812	Uncharacterized protein. (99 aa)
	A0A183X248	Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family. (138 aa)
	TRE_LOCUS17305	Uncharacterized protein. (83 aa)
	TRE_LOCUS17231	Ribosomal_L2_C domain-containing protein. (270 aa)
	TRE_LOCUS16534	Ribosomal_L16 domain-containing protein. (71 aa)
	A0A183WWC5	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (148 aa)
	A0A183WW46	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family. (243 aa)
	TRE_LOCUS16154	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (245 aa)
	TRE_LOCUS15929	Uncharacterized protein. (153 aa)
	A0A183WUU4	Ribosomal_L19e domain-containing protein. (139 aa)
	TRE_LOCUS15705	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (294 aa)
	TRE_LOCUS15091	Uncharacterized protein. (186 aa)
	TRE_LOCUS14792	Uncharacterized protein. (122 aa)
	TRE_LOCUS14638	Uncharacterized protein. (121 aa)
	TRE_LOCUS14444	Ribos_L4_asso_C domain-containing protein. (336 aa)
	TRE_LOCUS14307	Uncharacterized protein. (76 aa)
	TRE_LOCUS13940	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family. (106 aa)

Your Current Organism:

Trichobilharzia regenti

NCBI taxonomy Id: 157069
Other names: T. regenti, bird nasal schistosome

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A183VZM2	A0A183W145	A0A183VZM2	A0A183W145	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein.	0.994
A0A183VZM2	A0A183W2Z7	A0A183VZM2	A0A183W2Z7	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein.	0.999
A0A183VZM2	A0A183W4K8	A0A183VZM2	A0A183W4K8	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein.	0.999
A0A183VZM2	A0A183W6J0	A0A183VZM2	A0A183W6J0	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein.	0.999
A0A183VZM2	A0A183WAE7	A0A183VZM2	A0A183WAE7	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein.	0.999
A0A183VZM2	A0A183WBS1	A0A183VZM2	A0A183WBS1	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein.	0.999
A0A183VZM2	A0A183WDI3	A0A183VZM2	A0A183WDI3	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.	0.999
A0A183VZM2	A0A183WE07	A0A183VZM2	A0A183WE07	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family.	0.999
A0A183VZM2	A0A183WI48	A0A183VZM2	A0A183WI48	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein.	0.999
A0A183VZM2	A0A183WIU6	A0A183VZM2	A0A183WIU6	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Ribosomal_S10 domain-containing protein.	0.999
A0A183VZM2	A0A183WUU4	A0A183VZM2	A0A183WUU4	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Ribosomal_L19e domain-containing protein.	0.999
A0A183VZM2	A0A183WW46	A0A183VZM2	A0A183WW46	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.999
A0A183VZM2	A0A183WWC5	A0A183VZM2	A0A183WWC5	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	0.999
A0A183VZM2	A0A183X248	A0A183VZM2	A0A183X248	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family.	0.999
A0A183VZM2	A0A183XB15	A0A183VZM2	A0A183XB15	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein.	0.999
A0A183VZM2	TRE_LOCUS10297	A0A183VZM2	A0A183WDU4	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein.	0.999
A0A183VZM2	TRE_LOCUS10970	A0A183VZM2	A0A183WFR7	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	0.999
A0A183VZM2	TRE_LOCUS11931	A0A183VZM2	A0A183WIH7	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein.	0.996
A0A183VZM2	TRE_LOCUS12240	A0A183VZM2	A0A183WJD7	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.999
A0A183VZM2	TRE_LOCUS1235	A0A183VZM2	A0A183VIN8	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL38 family.	0.999