(54 nodes) Large ribosomal subunit network (Trichobilharzia regenti)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TRE_LOCUS14820	Uncharacterized protein. (96 aa)
	A0A183WRR1	Uncharacterized protein. (277 aa)
	TRE_LOCUS14792	Uncharacterized protein. (122 aa)
	TRE_LOCUS14444	Ribos_L4_asso_C domain-containing protein. (336 aa)
	TRE_LOCUS13940	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family. (106 aa)
	TRE_LOCUS13292	Uncharacterized protein. (132 aa)
	TRE_LOCUS13009	Uncharacterized protein. (217 aa)
	TRE_LOCUS12066	Uncharacterized protein. (178 aa)
	TRE_LOCUS11931	Uncharacterized protein. (179 aa)
	TRE_LOCUS11172	TGS domain-containing protein. (133 aa)
	A0A183WG08	Uncharacterized protein. (159 aa)
	TRE_LOCUS10700	Uncharacterized protein. (174 aa)
	A0A183WEQ5	Uncharacterized protein. (95 aa)
	TRE_LOCUS10438	Uncharacterized protein. (119 aa)
	TRE_LOCUS10199	Uncharacterized protein. (164 aa)
	A0A183WBS1	Uncharacterized protein. (88 aa)
	TRE_LOCUS9187	Uncharacterized protein. (264 aa)
	TRE_LOCUS8906	Uncharacterized protein. (107 aa)
	TRE_LOCUS15091	Uncharacterized protein. (186 aa)
	TRE_LOCUS6976	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (204 aa)
	TRE_LOCUS7061	Uncharacterized protein. (167 aa)
	A0A183W3T9	Uncharacterized protein. (136 aa)
	A0A183W3Z3	Uncharacterized protein. (98 aa)
	TRE_LOCUS7244	Uncharacterized protein. (122 aa)
	TRE_LOCUS7617	Uncharacterized protein. (279 aa)
	A0A183W6J0	Uncharacterized protein. (160 aa)
	TRE_LOCUS8497	Uncharacterized protein. (199 aa)
	TRE_LOCUS8539	MRP-L46 domain-containing protein. (206 aa)
	TRE_LOCUS8630	Uncharacterized protein. (103 aa)
	A0A183VTB0	Uncharacterized protein. (302 aa)
	TRE_LOCUS3217	Uncharacterized protein. (124 aa)
	TRE_LOCUS3096	Uncharacterized protein. (120 aa)
	TRE_LOCUS2941	Uncharacterized protein. (643 aa)
	TRE_LOCUS2672	Uncharacterized protein; Belongs to the peroxisomal membrane protein PXMP2/4 family. (148 aa)
	TRE_LOCUS1649	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (70 aa)
	TRE_LOCUS228	RF_PROK_I domain-containing protein. (168 aa)
	TRE_LOCUS65	Ribosomal_L16 domain-containing protein. (267 aa)
	TRE_LOCUS1036	Uncharacterized protein. (139 aa)
	A0A183X1K0	Uncharacterized protein. (159 aa)
	TRE_LOCUS17178	Ribosomal_L11_N domain-containing protein. (136 aa)
	TRE_LOCUS16534	Ribosomal_L16 domain-containing protein. (71 aa)
	A0A183WUU4	Ribosomal_L19e domain-containing protein. (139 aa)
	TRE_LOCUS15524	Uncharacterized protein. (146 aa)
	A0A183WTR2	Uncharacterized protein. (100 aa)
	TRE_LOCUS15485	Uncharacterized protein. (147 aa)
	TRE_LOCUS6723	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family. (113 aa)
	TRE_LOCUS8633	Uncharacterized protein. (69 aa)
	TRE_LOCUS8631	Uncharacterized protein. (120 aa)
	A0A183X248	Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family. (138 aa)
	TRE_LOCUS20195	Uncharacterized protein. (112 aa)
	TRE_LOCUS20248	Uncharacterized protein. (143 aa)
	TRE_LOCUS21087	Ribosomal_L30 domain-containing protein. (140 aa)
	TRE_LOCUS4058	Uncharacterized protein. (153 aa)
	TRE_LOCUS5323	Uncharacterized protein. (201 aa)

Your Current Organism:

Trichobilharzia regenti

NCBI taxonomy Id: 157069
Other names: T. regenti, bird nasal schistosome

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A183VTB0	A0A183W3T9	A0A183VTB0	A0A183W3T9	Uncharacterized protein.	Uncharacterized protein.	0.942
A0A183VTB0	A0A183W3Z3	A0A183VTB0	A0A183W3Z3	Uncharacterized protein.	Uncharacterized protein.	0.920
A0A183VTB0	A0A183WBS1	A0A183VTB0	A0A183WBS1	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A183VTB0	A0A183WEQ5	A0A183VTB0	A0A183WEQ5	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A183VTB0	A0A183WG08	A0A183VTB0	A0A183WG08	Uncharacterized protein.	Uncharacterized protein.	0.979
A0A183VTB0	A0A183WRR1	A0A183VTB0	A0A183WRR1	Uncharacterized protein.	Uncharacterized protein.	0.937
A0A183VTB0	A0A183WTR2	A0A183VTB0	A0A183WTR2	Uncharacterized protein.	Uncharacterized protein.	0.983
A0A183VTB0	A0A183X1K0	A0A183VTB0	A0A183X1K0	Uncharacterized protein.	Uncharacterized protein.	0.992
A0A183VTB0	A0A183X248	A0A183VTB0	A0A183X248	Uncharacterized protein.	Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family.	0.997
A0A183VTB0	TRE_LOCUS10199	A0A183VTB0	A0A183WDJ6	Uncharacterized protein.	Uncharacterized protein.	0.942
A0A183VTB0	TRE_LOCUS1036	A0A183VTB0	A0A183VI39	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A183VTB0	TRE_LOCUS10438	A0A183VTB0	A0A183WE85	Uncharacterized protein.	Uncharacterized protein.	0.989
A0A183VTB0	TRE_LOCUS10700	A0A183VTB0	A0A183WEZ9	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A183VTB0	TRE_LOCUS11172	A0A183VTB0	A0A183WGB7	Uncharacterized protein.	TGS domain-containing protein.	0.932
A0A183VTB0	TRE_LOCUS11931	A0A183VTB0	A0A183WIH7	Uncharacterized protein.	Uncharacterized protein.	0.989
A0A183VTB0	TRE_LOCUS12066	A0A183VTB0	A0A183WIW3	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A183VTB0	TRE_LOCUS13292	A0A183VTB0	A0A183WMD9	Uncharacterized protein.	Uncharacterized protein.	0.992
A0A183VTB0	TRE_LOCUS14444	A0A183VTB0	A0A183WQP3	Uncharacterized protein.	Ribos_L4_asso_C domain-containing protein.	0.989
A0A183VTB0	TRE_LOCUS14820	A0A183VTB0	A0A183WRR5	Uncharacterized protein.	Uncharacterized protein.	0.945
A0A183VTB0	TRE_LOCUS15091	A0A183VTB0	A0A183WSI7	Uncharacterized protein.	Uncharacterized protein.	0.997