(47 nodes) Immunoglobulin subtype 2 network (Trichobilharzia regenti)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TRE_LOCUS5655	Uncharacterized protein. (656 aa)
	TRE_LOCUS5677	Uncharacterized protein. (1399 aa)
	A0A183VYY5	Ig-like domain-containing protein. (284 aa)
	TRE_LOCUS5871	Uncharacterized protein. (613 aa)
	TRE_LOCUS6202	Uncharacterized protein. (405 aa)
	TRE_LOCUS6460	Ig-like domain-containing protein. (276 aa)
	TRE_LOCUS6573	Ig-like domain-containing protein. (325 aa)
	TRE_LOCUS7115	Uncharacterized protein. (405 aa)
	TRE_LOCUS7294	Ig-like domain-containing protein. (214 aa)
	TRE_LOCUS8400	Uncharacterized protein. (291 aa)
	TRE_LOCUS9578	Uncharacterized protein. (1402 aa)
	A0A183WBY3	Uncharacterized protein. (371 aa)
	TRE_LOCUS10133	Uncharacterized protein. (247 aa)
	A0A183WEK7	Ig-like domain-containing protein. (239 aa)
	TRE_LOCUS11656	Ig-like domain-containing protein. (89 aa)
	TRE_LOCUS11856	Uncharacterized protein. (319 aa)
	TRE_LOCUS12115	Ig-like domain-containing protein. (132 aa)
	A0A183WJ20	Uncharacterized protein. (234 aa)
	TRE_LOCUS12127	Ig-like domain-containing protein. (275 aa)
	A0A183WJR2	Ig-like domain-containing protein. (213 aa)
	A0A183WNS5	Ig-like domain-containing protein. (90 aa)
	A0A183X323	Ig-like domain-containing protein. (89 aa)
	A0A183X6L2	Ig-like domain-containing protein. (83 aa)
	A0A183X955	Ig-like domain-containing protein. (100 aa)
	TRE_LOCUS478	Ig-like domain-containing protein. (634 aa)
	TRE_LOCUS1440	Uncharacterized protein. (570 aa)
	TRE_LOCUS1487	Uncharacterized protein. (804 aa)
	TRE_LOCUS1503	Uncharacterized protein. (830 aa)
	TRE_LOCUS1751	Uncharacterized protein. (317 aa)
	TRE_LOCUS1917	Uncharacterized protein. (341 aa)
	A0A183VNL5	Uncharacterized protein. (1622 aa)
	A0A183VS20	Ig-like domain-containing protein. (100 aa)
	TRE_LOCUS3322	Uncharacterized protein. (557 aa)
	TRE_LOCUS3331	Uncharacterized protein. (1338 aa)
	TRE_LOCUS3370	Uncharacterized protein. (231 aa)
	TRE_LOCUS3404	Uncharacterized protein. (1311 aa)
	TRE_LOCUS3558	Uncharacterized protein. (230 aa)
	TRE_LOCUS3656	Uncharacterized protein. (328 aa)
	TRE_LOCUS3912	Ig-like domain-containing protein. (346 aa)
	TRE_LOCUS4210	Uncharacterized protein. (1270 aa)
	A0A183VV25	Uncharacterized protein. (653 aa)
	TRE_LOCUS4458	Uncharacterized protein. (206 aa)
	TRE_LOCUS4725	Ig-like domain-containing protein. (821 aa)
	TRE_LOCUS5079	Uncharacterized protein. (370 aa)
	TRE_LOCUS5465	Uncharacterized protein. (387 aa)
	TRE_LOCUS5537	Uncharacterized protein. (376 aa)
	TRE_LOCUS5612	Uncharacterized protein. (593 aa)

Your Current Organism:

Trichobilharzia regenti

NCBI taxonomy Id: 157069
Other names: T. regenti, bird nasal schistosome

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A183VNL5	A0A183VV25	A0A183VNL5	A0A183VV25	Uncharacterized protein.	Uncharacterized protein.	0.645
A0A183VNL5	TRE_LOCUS12127	A0A183VNL5	A0A183WJ26	Uncharacterized protein.	Ig-like domain-containing protein.	0.632
A0A183VNL5	TRE_LOCUS1503	A0A183VNL5	A0A183VLZ7	Uncharacterized protein.	Uncharacterized protein.	0.575
A0A183VNL5	TRE_LOCUS1751	A0A183VNL5	A0A183VMP5	Uncharacterized protein.	Uncharacterized protein.	0.575
A0A183VNL5	TRE_LOCUS4210	A0A183VNL5	A0A183VUQ3	Uncharacterized protein.	Uncharacterized protein.	0.410
A0A183VNL5	TRE_LOCUS4458	A0A183VNL5	A0A183VVF2	Uncharacterized protein.	Uncharacterized protein.	0.842
A0A183VNL5	TRE_LOCUS5465	A0A183VNL5	A0A183VYA9	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A183VNL5	TRE_LOCUS5537	A0A183VNL5	A0A183VYI1	Uncharacterized protein.	Uncharacterized protein.	0.842
A0A183VV25	A0A183VNL5	A0A183VV25	A0A183VNL5	Uncharacterized protein.	Uncharacterized protein.	0.645
A0A183VV25	TRE_LOCUS12127	A0A183VV25	A0A183WJ26	Uncharacterized protein.	Ig-like domain-containing protein.	0.804
A0A183VV25	TRE_LOCUS4210	A0A183VV25	A0A183VUQ3	Uncharacterized protein.	Uncharacterized protein.	0.518
A0A183VV25	TRE_LOCUS5465	A0A183VV25	A0A183VYA9	Uncharacterized protein.	Uncharacterized protein.	0.683
A0A183VV25	TRE_LOCUS5537	A0A183VV25	A0A183VYI1	Uncharacterized protein.	Uncharacterized protein.	0.485
A0A183VYY5	TRE_LOCUS12127	A0A183VYY5	A0A183WJ26	Ig-like domain-containing protein.	Ig-like domain-containing protein.	0.421
A0A183VYY5	TRE_LOCUS4210	A0A183VYY5	A0A183VUQ3	Ig-like domain-containing protein.	Uncharacterized protein.	0.422
A0A183VYY5	TRE_LOCUS5465	A0A183VYY5	A0A183VYA9	Ig-like domain-containing protein.	Uncharacterized protein.	0.582
A0A183VYY5	TRE_LOCUS5537	A0A183VYY5	A0A183VYI1	Ig-like domain-containing protein.	Uncharacterized protein.	0.578
A0A183WBY3	TRE_LOCUS1503	A0A183WBY3	A0A183VLZ7	Uncharacterized protein.	Uncharacterized protein.	0.575
A0A183WBY3	TRE_LOCUS1751	A0A183WBY3	A0A183VMP5	Uncharacterized protein.	Uncharacterized protein.	0.575
A0A183WBY3	TRE_LOCUS3558	A0A183WBY3	A0A183VSV2	Uncharacterized protein.	Uncharacterized protein.	0.762