(58 nodes) Gluconeogenesis network (Trichobilharzia regenti)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A183W6F2	Uncharacterized protein. (107 aa)
	A0A183VJ29	Uncharacterized protein. (39 aa)
	TRE_LOCUS38	Uncharacterized protein. (561 aa)
	TRE_LOCUS63	Uncharacterized protein. (75 aa)
	TRE_LOCUS86	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (126 aa)
	A0A183VJF2	Uncharacterized protein. (46 aa)
	TRE_LOCUS199	FBPase domain-containing protein. (104 aa)
	TRE_LOCUS1475	Uncharacterized protein. (532 aa)
	A0A183VNE9	Uncharacterized protein. (218 aa)
	TRE_LOCUS2261	Enolase_C domain-containing protein. (162 aa)
	TRE_LOCUS2549	MFS domain-containing protein. (371 aa)
	TRE_LOCUS3031	Uncharacterized protein; Belongs to the LDH/MDH superfamily. (302 aa)
	TRE_LOCUS3329	Uncharacterized protein. (184 aa)
	TRE_LOCUS3378	MFS domain-containing protein. (246 aa)
	TRE_LOCUS4146	Uncharacterized protein. (487 aa)
	TRE_LOCUS4530	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (200 aa)
	TRE_LOCUS4756	Phosphoglycerate kinase. (139 aa)
	TRE_LOCUS4851	Fructose-bisphosphate aldolase; Belongs to the class I fructose-bisphosphate aldolase family. (352 aa)
	TRE_LOCUS5165	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (113 aa)
	TRE_LOCUS5979	Uncharacterized protein. (75 aa)
	TRE_LOCUS7161	Uncharacterized protein. (80 aa)
	TRE_LOCUS7253	Glyceraldehyde-3-phosphate dehydrogenase. (326 aa)
	A0A183W4U7	Uncharacterized protein. (85 aa)
	TRE_LOCUS7564	Uncharacterized protein. (87 aa)
	TRE_LOCUS7891	Triosephosphate isomerase. (239 aa)
	A0A183W7Z5	Uncharacterized protein. (241 aa)
	TRE_LOCUS8773	Gp_dh_N domain-containing protein. (185 aa)
	TRE_LOCUS9036	Aminotran_1_2 domain-containing protein. (254 aa)
	A0A183WBB5	Uncharacterized protein. (345 aa)
	TRE_LOCUS9906	Lipoyl-binding domain-containing protein. (113 aa)
	TRE_LOCUS10090	Phosphoglycerate kinase. (195 aa)
	TRE_LOCUS10287	Uncharacterized protein. (112 aa)
	A0A183WG36	Enolase_C domain-containing protein. (137 aa)
	TRE_LOCUS11275	Uncharacterized protein. (100 aa)
	A0A183WI86	PYC_OADA domain-containing protein. (166 aa)
	A0A183WIL1	FBPase domain-containing protein; Belongs to the FBPase class 1 family. (55 aa)
	A0A183WJG4	Pyruvate carboxyltransferase domain-containing protein. (98 aa)
	TRE_LOCUS12451	EF-hand domain-containing protein. (79 aa)
	A0A183WK30	Aspartate aminotransferase. (183 aa)
	TRE_LOCUS12806	Enolase_N domain-containing protein. (158 aa)
	A0A183WLW5	Pyruvate carboxyltransferase domain-containing protein. (53 aa)
	TRE_LOCUS13536	Uncharacterized protein. (113 aa)
	A0A183WPD3	Uncharacterized protein. (64 aa)
	TRE_LOCUS14170	Aminotran_1_2 domain-containing protein. (113 aa)
	TRE_LOCUS14497	Uncharacterized protein. (104 aa)
	A0A183WSC4	Malate dehydrogenase. (250 aa)
	TRE_LOCUS15421	Gp_dh_N domain-containing protein; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. (315 aa)
	A0A183WUE3	Uncharacterized protein. (70 aa)
	TRE_LOCUS16111	Ldh_1_C domain-containing protein. (75 aa)
	TRE_LOCUS16352	Uncharacterized protein. (77 aa)
	TRE_LOCUS17876	Aminotran_1_2 domain-containing protein. (78 aa)
	A0A183X1E7	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (124 aa)
	TRE_LOCUS18620	Uncharacterized protein. (210 aa)
	TRE_LOCUS19133	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (68 aa)
	TRE_LOCUS19731	Uncharacterized protein. (92 aa)
	A0A183X6L7	Uncharacterized protein. (90 aa)
	A0A183X8N2	Uncharacterized protein. (417 aa)
	TRE_LOCUS20751	Uncharacterized protein. (118 aa)

Your Current Organism:

Trichobilharzia regenti

NCBI taxonomy Id: 157069
Other names: T. regenti, bird nasal schistosome

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A183VNE9	A0A183W7Z5	A0A183VNE9	A0A183W7Z5	Uncharacterized protein.	Uncharacterized protein.	0.800
A0A183VNE9	A0A183WG36	A0A183VNE9	A0A183WG36	Uncharacterized protein.	Enolase_C domain-containing protein.	0.806
A0A183VNE9	A0A183WIL1	A0A183VNE9	A0A183WIL1	Uncharacterized protein.	FBPase domain-containing protein; Belongs to the FBPase class 1 family.	0.834
A0A183VNE9	A0A183WSC4	A0A183VNE9	A0A183WSC4	Uncharacterized protein.	Malate dehydrogenase.	0.742
A0A183VNE9	A0A183WUE3	A0A183VNE9	A0A183WUE3	Uncharacterized protein.	Uncharacterized protein.	0.720
A0A183VNE9	A0A183X6L7	A0A183VNE9	A0A183X6L7	Uncharacterized protein.	Uncharacterized protein.	0.891
A0A183VNE9	A0A183X8N2	A0A183VNE9	A0A183X8N2	Uncharacterized protein.	Uncharacterized protein.	0.680
A0A183VNE9	TRE_LOCUS10090	A0A183VNE9	A0A183WD86	Uncharacterized protein.	Phosphoglycerate kinase.	0.836
A0A183VNE9	TRE_LOCUS10287	A0A183VNE9	A0A183WDT3	Uncharacterized protein.	Uncharacterized protein.	0.566
A0A183VNE9	TRE_LOCUS12806	A0A183VNE9	A0A183WL02	Uncharacterized protein.	Enolase_N domain-containing protein.	0.806
A0A183VNE9	TRE_LOCUS15421	A0A183VNE9	A0A183WTG9	Uncharacterized protein.	Gp_dh_N domain-containing protein; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.	0.950
A0A183VNE9	TRE_LOCUS16111	A0A183VNE9	A0A183WVF7	Uncharacterized protein.	Ldh_1_C domain-containing protein.	0.742
A0A183VNE9	TRE_LOCUS18620	A0A183VNE9	A0A183X2L8	Uncharacterized protein.	Uncharacterized protein.	0.891
A0A183VNE9	TRE_LOCUS199	A0A183VNE9	A0A183VJL5	Uncharacterized protein.	FBPase domain-containing protein.	0.834
A0A183VNE9	TRE_LOCUS20751	A0A183VNE9	A0A183X8P7	Uncharacterized protein.	Uncharacterized protein.	0.720
A0A183VNE9	TRE_LOCUS2261	A0A183VNE9	A0A183VP55	Uncharacterized protein.	Enolase_C domain-containing protein.	0.806
A0A183VNE9	TRE_LOCUS3031	A0A183VNE9	A0A183VRC4	Uncharacterized protein.	Uncharacterized protein; Belongs to the LDH/MDH superfamily.	0.686
A0A183VNE9	TRE_LOCUS3329	A0A183VNE9	A0A183VS72	Uncharacterized protein.	Uncharacterized protein.	0.800
A0A183VNE9	TRE_LOCUS38	A0A183VNE9	A0A183VJ54	Uncharacterized protein.	Uncharacterized protein.	0.806
A0A183VNE9	TRE_LOCUS4146	A0A183VNE9	A0A183VUJ1	Uncharacterized protein.	Uncharacterized protein.	0.426