(6 nodes) Cadherin-like network (Trichobilharzia regenti)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TRE_LOCUS14275	Uncharacterized protein. (104 aa)
	A0A183VSH9	Calx-beta domain-containing protein. (602 aa)
	TRE_LOCUS6291	Uncharacterized protein. (317 aa)
	TRE_LOCUS7540	Uncharacterized protein. (152 aa)
	TRE_LOCUS10343	Uncharacterized protein. (254 aa)
	TRE_LOCUS14274	Uncharacterized protein. (320 aa)

Your Current Organism:

Trichobilharzia regenti

NCBI taxonomy Id: 157069
Other names: T. regenti, bird nasal schistosome

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A183VSH9	TRE_LOCUS14274	A0A183VSH9	A0A183WQ71	Calx-beta domain-containing protein.	Uncharacterized protein.	0.924
A0A183VSH9	TRE_LOCUS6291	A0A183VSH9	A0A183W0N4	Calx-beta domain-containing protein.	Uncharacterized protein.	0.937
TRE_LOCUS14274	A0A183VSH9	A0A183WQ71	A0A183VSH9	Uncharacterized protein.	Calx-beta domain-containing protein.	0.924
TRE_LOCUS14274	TRE_LOCUS6291	A0A183WQ71	A0A183W0N4	Uncharacterized protein.	Uncharacterized protein.	0.890
TRE_LOCUS14274	TRE_LOCUS7540	A0A183WQ71	A0A183W585	Uncharacterized protein.	Uncharacterized protein.	0.430
TRE_LOCUS6291	A0A183VSH9	A0A183W0N4	A0A183VSH9	Uncharacterized protein.	Calx-beta domain-containing protein.	0.937
TRE_LOCUS6291	TRE_LOCUS14274	A0A183W0N4	A0A183WQ71	Uncharacterized protein.	Uncharacterized protein.	0.890
TRE_LOCUS6291	TRE_LOCUS7540	A0A183W0N4	A0A183W585	Uncharacterized protein.	Uncharacterized protein.	0.412
TRE_LOCUS7540	TRE_LOCUS14274	A0A183W585	A0A183WQ71	Uncharacterized protein.	Uncharacterized protein.	0.430
TRE_LOCUS7540	TRE_LOCUS6291	A0A183W585	A0A183W0N4	Uncharacterized protein.	Uncharacterized protein.	0.412