(21 nodes) Immunoglobulin like network (Trichobilharzia regenti)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TRE_LOCUS11336	Uncharacterized protein. (226 aa)
	A0A183WVI9	Uncharacterized protein. (669 aa)
	A0A183WMD3	Uncharacterized protein. (446 aa)
	A0A183WDV1	Ig-like domain-containing protein. (325 aa)
	TRE_LOCUS9578	Uncharacterized protein. (1402 aa)
	TRE_LOCUS7398	Ig-like domain-containing protein. (319 aa)
	TRE_LOCUS7294	Ig-like domain-containing protein. (214 aa)
	TRE_LOCUS5871	Uncharacterized protein. (613 aa)
	TRE_LOCUS5655	Uncharacterized protein. (656 aa)
	TRE_LOCUS5537	Uncharacterized protein. (376 aa)
	TRE_LOCUS5465	Uncharacterized protein. (387 aa)
	TRE_LOCUS4210	Uncharacterized protein. (1270 aa)
	TRE_LOCUS4178	Ig domain-containing protein. (209 aa)
	TRE_LOCUS3656	Uncharacterized protein. (328 aa)
	TRE_LOCUS3404	Uncharacterized protein. (1311 aa)
	TRE_LOCUS3322	Uncharacterized protein. (557 aa)
	TRE_LOCUS2531	Uncharacterized protein. (305 aa)
	A0A183VPF3	Uncharacterized protein. (1204 aa)
	TRE_LOCUS2344	Uncharacterized protein. (716 aa)
	A0A183VNL5	Uncharacterized protein. (1622 aa)
	TRE_LOCUS1625	Ig-like domain-containing protein. (234 aa)

Your Current Organism:

Trichobilharzia regenti

NCBI taxonomy Id: 157069
Other names: T. regenti, bird nasal schistosome

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A183VNL5	A0A183WMD3	A0A183VNL5	A0A183WMD3	Uncharacterized protein.	Uncharacterized protein.	0.403
A0A183VNL5	TRE_LOCUS4210	A0A183VNL5	A0A183VUQ3	Uncharacterized protein.	Uncharacterized protein.	0.410
A0A183VNL5	TRE_LOCUS5465	A0A183VNL5	A0A183VYA9	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A183VNL5	TRE_LOCUS5537	A0A183VNL5	A0A183VYI1	Uncharacterized protein.	Uncharacterized protein.	0.842
A0A183WMD3	A0A183VNL5	A0A183WMD3	A0A183VNL5	Uncharacterized protein.	Uncharacterized protein.	0.403
A0A183WMD3	TRE_LOCUS4210	A0A183WMD3	A0A183VUQ3	Uncharacterized protein.	Uncharacterized protein.	0.576
A0A183WMD3	TRE_LOCUS5465	A0A183WMD3	A0A183VYA9	Uncharacterized protein.	Uncharacterized protein.	0.940
A0A183WMD3	TRE_LOCUS5537	A0A183WMD3	A0A183VYI1	Uncharacterized protein.	Uncharacterized protein.	0.911
TRE_LOCUS1625	TRE_LOCUS2531	A0A183VMB9	A0A183VPX5	Ig-like domain-containing protein.	Uncharacterized protein.	0.985
TRE_LOCUS1625	TRE_LOCUS3404	A0A183VMB9	A0A183VSE8	Ig-like domain-containing protein.	Uncharacterized protein.	0.431
TRE_LOCUS1625	TRE_LOCUS5465	A0A183VMB9	A0A183VYA9	Ig-like domain-containing protein.	Uncharacterized protein.	0.494
TRE_LOCUS1625	TRE_LOCUS5537	A0A183VMB9	A0A183VYI1	Ig-like domain-containing protein.	Uncharacterized protein.	0.494
TRE_LOCUS1625	TRE_LOCUS9578	A0A183VMB9	A0A183WBS5	Ig-like domain-containing protein.	Uncharacterized protein.	0.400
TRE_LOCUS2344	TRE_LOCUS4210	A0A183VPD8	A0A183VUQ3	Uncharacterized protein.	Uncharacterized protein.	0.493
TRE_LOCUS2344	TRE_LOCUS5465	A0A183VPD8	A0A183VYA9	Uncharacterized protein.	Uncharacterized protein.	0.895
TRE_LOCUS2344	TRE_LOCUS5537	A0A183VPD8	A0A183VYI1	Uncharacterized protein.	Uncharacterized protein.	0.893
TRE_LOCUS2531	TRE_LOCUS1625	A0A183VPX5	A0A183VMB9	Uncharacterized protein.	Ig-like domain-containing protein.	0.985
TRE_LOCUS2531	TRE_LOCUS3404	A0A183VPX5	A0A183VSE8	Uncharacterized protein.	Uncharacterized protein.	0.434
TRE_LOCUS2531	TRE_LOCUS4178	A0A183VPX5	A0A183VUM2	Uncharacterized protein.	Ig domain-containing protein.	0.695
TRE_LOCUS2531	TRE_LOCUS5871	A0A183VPX5	A0A183VZG5	Uncharacterized protein.	Uncharacterized protein.	0.483