(24 nodes) Mixed, incl. Amidase, and Cyclophilin-like domain superfamily network (Rhodococcus sp. 2G)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APE08377.1	FAD-containing monooxygenase EthA; Derived by automated computational analysis using gene prediction method: Protein Homology. (523 aa)
	APE08378.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (175 aa)
	APE08379.1	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (282 aa)
	APE08380.1	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (216 aa)
	APE08381.1	Urea amidolyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (656 aa)
	APE08382.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (255 aa)
	APE08383.1	2OG-Fe(II) oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the iron/ascorbate-dependent oxidoreductase family. (343 aa)
	APE08384.1	Sodium:solute symporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (493 aa)
	APE08695.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (63 aa)
	APE08696.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the amidase family. (128 aa)
	aspS	aspartate--tRNA ligase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. (595 aa)
	gatB	aspartyl/glutamyl-tRNA amidotransferase subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily. (502 aa)
	gatA	aspartyl/glutamyl-tRNA amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln). (491 aa)
	gatC	asparaginyl/glutamyl-tRNA amidotransferase subunit C; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family. (99 aa)
	APE10116.1	Amidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the amidase family. (502 aa)
	APE10320.1	Allophanate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (574 aa)
	APE10604.1	1-pyrroline-5-carboxylate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aldehyde dehydrogenase family. (1103 aa)
	BO226_20705	AMP-dependent synthetase; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aldehyde dehydrogenase family. (503 aa)
	APE11522.1	Amidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the amidase family. (465 aa)
	APE11586.1	Amidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the amidase family. (448 aa)
	APE11752.1	Allophanate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (290 aa)
	APE11753.1	Allophanate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (202 aa)
	pxpA	Hypothetical protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate. (252 aa)
	APE11783.1	Amidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the amidase family. (456 aa)

Your Current Organism:

Rhodococcus sp. 2G

NCBI taxonomy Id: 1570939
Other names: R. sp. 2G

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APE08377.1	APE08378.1	BO226_03360	BO226_03365	FAD-containing monooxygenase EthA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.513
APE08377.1	APE08383.1	BO226_03360	BO226_03390	FAD-containing monooxygenase EthA; Derived by automated computational analysis using gene prediction method: Protein Homology.	2OG-Fe(II) oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the iron/ascorbate-dependent oxidoreductase family.	0.424
APE08378.1	APE08377.1	BO226_03365	BO226_03360	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAD-containing monooxygenase EthA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.513
APE08378.1	APE08379.1	BO226_03365	BO226_03370	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.501
APE08378.1	APE08380.1	BO226_03365	BO226_03375	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.501
APE08378.1	APE08381.1	BO226_03365	BO226_03380	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urea amidolyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.501
APE08378.1	APE08382.1	BO226_03365	BO226_03385	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.501
APE08378.1	APE08383.1	BO226_03365	BO226_03390	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	2OG-Fe(II) oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the iron/ascorbate-dependent oxidoreductase family.	0.501
APE08378.1	APE08384.1	BO226_03365	BO226_03395	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sodium:solute symporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	0.462
APE08379.1	APE08378.1	BO226_03370	BO226_03365	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.501
APE08379.1	APE08380.1	BO226_03370	BO226_03375	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.921
APE08379.1	APE08381.1	BO226_03370	BO226_03380	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urea amidolyase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
APE08379.1	APE08382.1	BO226_03370	BO226_03385	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.860
APE08379.1	APE08383.1	BO226_03370	BO226_03390	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2OG-Fe(II) oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the iron/ascorbate-dependent oxidoreductase family.	0.781
APE08379.1	APE08384.1	BO226_03370	BO226_03395	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sodium:solute symporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.	0.770
APE08379.1	APE10320.1	BO226_03370	BO226_14820	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Allophanate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.944
APE08379.1	APE11752.1	BO226_03370	BO226_23295	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Allophanate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.590
APE08379.1	APE11753.1	BO226_03370	BO226_23305	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Allophanate hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.533
APE08380.1	APE08378.1	BO226_03375	BO226_03365	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.501
APE08380.1	APE08379.1	BO226_03375	BO226_03370	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Urea carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.921