(20 nodes) Mixed, incl. O-acyltransferase WSD1, C-terminal, and Acyl-CoA dehydrogenase family member 10/11, N-terminal network (Rhodococcus sp. 2G)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APE08022.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (407 aa)
	APE08670.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (368 aa)
	APE08909.1	Diacylglycerol O-acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the long-chain O-acyltransferase family. (470 aa)
	BO226_06950	Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (343 aa)
	APE09458.1	Diacylglycerol O-acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the long-chain O-acyltransferase family. (466 aa)
	APE09505.1	Diacylglycerol O-acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the long-chain O-acyltransferase family. (480 aa)
	APE09935.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (169 aa)
	APE09936.1	Diacylglycerol O-acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the long-chain O-acyltransferase family. (469 aa)
	APE09937.1	HAD family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (177 aa)
	APE09938.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (183 aa)
	APE09994.1	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (204 aa)
	APE10027.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (491 aa)
	APE10122.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (236 aa)
	APE10722.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (445 aa)
	APE11149.1	Short chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (252 aa)
	APE11150.1	Phosphotransferase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (357 aa)
	APE11151.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (410 aa)
	APE11152.1	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (195 aa)
	APE11269.1	Diacylglycerol O-acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (473 aa)
	APE11733.1	TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (208 aa)

Your Current Organism:

Rhodococcus sp. 2G

NCBI taxonomy Id: 1570939
Other names: R. sp. 2G

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... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APE08022.1	APE08909.1	BO226_01270	BO226_06460	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diacylglycerol O-acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the long-chain O-acyltransferase family.	0.622
APE08022.1	APE09458.1	BO226_01270	BO226_09785	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diacylglycerol O-acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the long-chain O-acyltransferase family.	0.603
APE08022.1	APE09505.1	BO226_01270	BO226_10060	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diacylglycerol O-acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the long-chain O-acyltransferase family.	0.603
APE08022.1	APE09936.1	BO226_01270	BO226_12610	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diacylglycerol O-acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the long-chain O-acyltransferase family.	0.685
APE08022.1	APE10722.1	BO226_01270	BO226_17205	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.470
APE08022.1	BO226_06950	BO226_01270	BO226_06950	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
APE08670.1	APE08909.1	BO226_05095	BO226_06460	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diacylglycerol O-acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the long-chain O-acyltransferase family.	0.834
APE08670.1	APE09458.1	BO226_05095	BO226_09785	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diacylglycerol O-acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the long-chain O-acyltransferase family.	0.706
APE08670.1	APE09505.1	BO226_05095	BO226_10060	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diacylglycerol O-acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the long-chain O-acyltransferase family.	0.705
APE08670.1	APE09936.1	BO226_05095	BO226_12610	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Diacylglycerol O-acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the long-chain O-acyltransferase family.	0.761
APE08670.1	APE10027.1	BO226_05095	BO226_13140	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.572
APE08670.1	APE10122.1	BO226_05095	BO226_13670	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.656
APE08670.1	APE10722.1	BO226_05095	BO226_17205	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.701
APE08670.1	BO226_06950	BO226_05095	BO226_06950	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.645
APE08909.1	APE08022.1	BO226_06460	BO226_01270	Diacylglycerol O-acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the long-chain O-acyltransferase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.622
APE08909.1	APE08670.1	BO226_06460	BO226_05095	Diacylglycerol O-acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the long-chain O-acyltransferase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.834
APE08909.1	APE09458.1	BO226_06460	BO226_09785	Diacylglycerol O-acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the long-chain O-acyltransferase family.	Diacylglycerol O-acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the long-chain O-acyltransferase family.	0.694
APE08909.1	APE09505.1	BO226_06460	BO226_10060	Diacylglycerol O-acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the long-chain O-acyltransferase family.	Diacylglycerol O-acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the long-chain O-acyltransferase family.	0.698
APE08909.1	APE09936.1	BO226_06460	BO226_12610	Diacylglycerol O-acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the long-chain O-acyltransferase family.	Diacylglycerol O-acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the long-chain O-acyltransferase family.	0.746
APE08909.1	APE10122.1	BO226_06460	BO226_13670	Diacylglycerol O-acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the long-chain O-acyltransferase family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.758