(10 nodes) Mixed, incl. Ion channel, and BCCT transporter family network (Rhodococcus sp. 2G)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APE08069.1	Arsenate reductase (glutaredoxin); Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ArsC family. (115 aa)
	mscL-2	Mechanosensitive ion channel protein MscL; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell. (149 aa)
	APE08071.1	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (120 aa)
	APE08072.1	Choline transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the BCCT transporter (TC 2.A.15) family. (536 aa)
	APE08073.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (148 aa)
	APE08074.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (266 aa)
	APE11734.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (158 aa)
	APE11735.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (67 aa)
	APE11736.1	Peroxiredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (146 aa)
	APE11737.1	Disulfide bond formation protein DsbA; Derived by automated computational analysis using gene prediction method: Protein Homology. (228 aa)

Your Current Organism:

Rhodococcus sp. 2G

NCBI taxonomy Id: 1570939
Other names: R. sp. 2G

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APE08069.1	APE08071.1	BO226_01535	BO226_01545	Arsenate reductase (glutaredoxin); Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ArsC family.	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.556
APE08069.1	APE08072.1	BO226_01535	BO226_01550	Arsenate reductase (glutaredoxin); Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ArsC family.	Choline transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the BCCT transporter (TC 2.A.15) family.	0.400
APE08069.1	APE11737.1	BO226_01535	BO226_23205	Arsenate reductase (glutaredoxin); Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ArsC family.	Disulfide bond formation protein DsbA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.899
APE08069.1	mscL-2	BO226_01535	BO226_01540	Arsenate reductase (glutaredoxin); Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ArsC family.	Mechanosensitive ion channel protein MscL; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.	0.539
APE08071.1	APE08069.1	BO226_01545	BO226_01535	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arsenate reductase (glutaredoxin); Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ArsC family.	0.556
APE08071.1	APE08072.1	BO226_01545	BO226_01550	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Choline transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the BCCT transporter (TC 2.A.15) family.	0.544
APE08071.1	APE08073.1	BO226_01545	BO226_01555	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.513
APE08071.1	mscL-2	BO226_01545	BO226_01540	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mechanosensitive ion channel protein MscL; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.	0.749
APE08072.1	APE08069.1	BO226_01550	BO226_01535	Choline transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the BCCT transporter (TC 2.A.15) family.	Arsenate reductase (glutaredoxin); Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ArsC family.	0.400
APE08072.1	APE08071.1	BO226_01550	BO226_01545	Choline transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the BCCT transporter (TC 2.A.15) family.	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.544
APE08072.1	APE08073.1	BO226_01550	BO226_01555	Choline transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the BCCT transporter (TC 2.A.15) family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.825
APE08072.1	APE08074.1	BO226_01550	BO226_01560	Choline transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the BCCT transporter (TC 2.A.15) family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.541
APE08072.1	mscL-2	BO226_01550	BO226_01540	Choline transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the BCCT transporter (TC 2.A.15) family.	Mechanosensitive ion channel protein MscL; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.	0.605
APE08073.1	APE08071.1	BO226_01555	BO226_01545	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.513
APE08073.1	APE08072.1	BO226_01555	BO226_01550	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Choline transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the BCCT transporter (TC 2.A.15) family.	0.825
APE08073.1	APE08074.1	BO226_01555	BO226_01560	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.541
APE08073.1	mscL-2	BO226_01555	BO226_01540	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mechanosensitive ion channel protein MscL; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.	0.498
APE08074.1	APE08072.1	BO226_01560	BO226_01550	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Choline transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the BCCT transporter (TC 2.A.15) family.	0.541
APE08074.1	APE08073.1	BO226_01560	BO226_01555	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.541
APE11734.1	APE11735.1	BO226_23190	BO226_23195	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.773