(19 nodes) Polyketide synthase, phosphopantetheine-binding domain, and Isochorismatase-like network (Rhodococcus sp. 2G)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APE07947.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (583 aa)
	BO226_00835	Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (87 aa)
	APE11972.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (998 aa)
	APE11974.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (235 aa)
	APE07955.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (483 aa)
	APE08145.1	2,3-dihydro-2,3-dihydroxybenzoate synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (228 aa)
	APE08148.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (3541 aa)
	APE11998.1	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (4075 aa)
	APE09051.1	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (4582 aa)
	APE09329.1	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (7349 aa)
	APE10126.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (7396 aa)
	APE10127.1	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (4665 aa)
	APE10128.1	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (5850 aa)
	APE12320.1	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (6249 aa)
	APE12325.1	Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family. (786 aa)
	APE10846.1	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1653 aa)
	APE11870.1	MbtH family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (78 aa)
	APE11907.1	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (2602 aa)
	APE11909.1	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (3086 aa)

Your Current Organism:

Rhodococcus sp. 2G

NCBI taxonomy Id: 1570939
Other names: R. sp. 2G

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APE07947.1	APE07955.1	BO226_00825	BO226_00885	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.870
APE07947.1	APE08145.1	BO226_00825	BO226_01995	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	2,3-dihydro-2,3-dihydroxybenzoate synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.471
APE07947.1	APE08148.1	BO226_00825	BO226_02010	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.899
APE07947.1	APE09051.1	BO226_00825	BO226_07330	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.969
APE07947.1	APE09329.1	BO226_00825	BO226_09035	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.927
APE07947.1	APE10126.1	BO226_00825	BO226_13695	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.963
APE07947.1	APE10127.1	BO226_00825	BO226_13700	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.969
APE07947.1	APE10128.1	BO226_00825	BO226_13705	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.965
APE07947.1	APE10846.1	BO226_00825	BO226_17920	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.982
APE07947.1	APE11870.1	BO226_00825	BO226_23955	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	MbtH family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.490
APE07947.1	APE11907.1	BO226_00825	BO226_24160	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.931
APE07947.1	APE11909.1	BO226_00825	BO226_24170	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.918
APE07947.1	APE11972.1	BO226_00825	BO226_00840	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.973
APE07947.1	APE11974.1	BO226_00825	BO226_00870	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.734
APE07947.1	APE11998.1	BO226_00825	BO226_02015	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.881
APE07947.1	APE12320.1	BO226_00825	BO226_16120	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.929
APE07947.1	APE12325.1	BO226_00825	BO226_16235	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.	0.574
APE07947.1	BO226_00835	BO226_00825	BO226_00835	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.812
APE07955.1	APE07947.1	BO226_00885	BO226_00825	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.870
APE07955.1	APE08145.1	BO226_00885	BO226_01995	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	2,3-dihydro-2,3-dihydroxybenzoate synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.453