(14 nodes) Polyketide synthase, phosphopantetheine-binding domain, and Isochorismatase-like network (Rhodococcus sp. 2G)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BO226_00835	Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (87 aa)
	APE08145.1	2,3-dihydro-2,3-dihydroxybenzoate synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (228 aa)
	APE08148.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (3541 aa)
	APE11998.1	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (4075 aa)
	APE09051.1	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (4582 aa)
	APE09329.1	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (7349 aa)
	APE10126.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (7396 aa)
	APE10127.1	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (4665 aa)
	APE10128.1	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (5850 aa)
	APE12320.1	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (6249 aa)
	APE12325.1	Cytochrome; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family. (786 aa)
	APE10846.1	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1653 aa)
	APE11870.1	MbtH family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (78 aa)
	APE11909.1	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (3086 aa)

Your Current Organism:

Rhodococcus sp. 2G

NCBI taxonomy Id: 1570939
Other names: R. sp. 2G

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APE08145.1	APE08148.1	BO226_01995	BO226_02010	2,3-dihydro-2,3-dihydroxybenzoate synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
APE08145.1	APE09051.1	BO226_01995	BO226_07330	2,3-dihydro-2,3-dihydroxybenzoate synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APE08145.1	APE09329.1	BO226_01995	BO226_09035	2,3-dihydro-2,3-dihydroxybenzoate synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APE08145.1	APE10126.1	BO226_01995	BO226_13695	2,3-dihydro-2,3-dihydroxybenzoate synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
APE08145.1	APE10127.1	BO226_01995	BO226_13700	2,3-dihydro-2,3-dihydroxybenzoate synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
APE08145.1	APE10128.1	BO226_01995	BO226_13705	2,3-dihydro-2,3-dihydroxybenzoate synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
APE08145.1	APE10846.1	BO226_01995	BO226_17920	2,3-dihydro-2,3-dihydroxybenzoate synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APE08145.1	APE11870.1	BO226_01995	BO226_23955	2,3-dihydro-2,3-dihydroxybenzoate synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	MbtH family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.992
APE08145.1	APE11909.1	BO226_01995	BO226_24170	2,3-dihydro-2,3-dihydroxybenzoate synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
APE08145.1	APE11998.1	BO226_01995	BO226_02015	2,3-dihydro-2,3-dihydroxybenzoate synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.967
APE08145.1	APE12320.1	BO226_01995	BO226_16120	2,3-dihydro-2,3-dihydroxybenzoate synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APE08145.1	BO226_00835	BO226_01995	BO226_00835	2,3-dihydro-2,3-dihydroxybenzoate synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768
APE08148.1	APE08145.1	BO226_02010	BO226_01995	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	2,3-dihydro-2,3-dihydroxybenzoate synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APE08148.1	APE09051.1	BO226_02010	BO226_07330	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.980
APE08148.1	APE09329.1	BO226_02010	BO226_09035	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.978
APE08148.1	APE10126.1	BO226_02010	BO226_13695	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.977
APE08148.1	APE10127.1	BO226_02010	BO226_13700	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.993
APE08148.1	APE10128.1	BO226_02010	BO226_13705	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.992
APE08148.1	APE10846.1	BO226_02010	BO226_17920	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APE08148.1	APE11870.1	BO226_02010	BO226_23955	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	MbtH family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999