(5 nodes) Amino acid adenylation domain network (Rhodococcus sp. 2G)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APE08145.1	2,3-dihydro-2,3-dihydroxybenzoate synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (228 aa)
	APE09329.1	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (7349 aa)
	APE10127.1	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (4665 aa)
	APE10128.1	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (5850 aa)
	APE12320.1	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (6249 aa)

Your Current Organism:

Rhodococcus sp. 2G

NCBI taxonomy Id: 1570939
Other names: R. sp. 2G

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APE08145.1	APE09329.1	BO226_01995	BO226_09035	2,3-dihydro-2,3-dihydroxybenzoate synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APE08145.1	APE10127.1	BO226_01995	BO226_13700	2,3-dihydro-2,3-dihydroxybenzoate synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
APE08145.1	APE10128.1	BO226_01995	BO226_13705	2,3-dihydro-2,3-dihydroxybenzoate synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
APE08145.1	APE12320.1	BO226_01995	BO226_16120	2,3-dihydro-2,3-dihydroxybenzoate synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APE09329.1	APE08145.1	BO226_09035	BO226_01995	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2,3-dihydro-2,3-dihydroxybenzoate synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APE09329.1	APE10127.1	BO226_09035	BO226_13700	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
APE09329.1	APE10128.1	BO226_09035	BO226_13705	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
APE09329.1	APE12320.1	BO226_09035	BO226_16120	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APE10127.1	APE08145.1	BO226_13700	BO226_01995	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	2,3-dihydro-2,3-dihydroxybenzoate synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APE10127.1	APE09329.1	BO226_13700	BO226_09035	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APE10127.1	APE10128.1	BO226_13700	BO226_13705	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
APE10127.1	APE12320.1	BO226_13700	BO226_16120	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APE10128.1	APE08145.1	BO226_13705	BO226_01995	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	2,3-dihydro-2,3-dihydroxybenzoate synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APE10128.1	APE09329.1	BO226_13705	BO226_09035	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APE10128.1	APE10127.1	BO226_13705	BO226_13700	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
APE10128.1	APE12320.1	BO226_13705	BO226_16120	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APE12320.1	APE08145.1	BO226_16120	BO226_01995	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2,3-dihydro-2,3-dihydroxybenzoate synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APE12320.1	APE09329.1	BO226_16120	BO226_09035	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APE12320.1	APE10127.1	BO226_16120	BO226_13700	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
APE12320.1	APE10128.1	BO226_16120	BO226_13705	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999