(20 nodes) Response to organic substance network (Rhodococcus sp. 2G)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APE11387.1	Benzoate 1,2-dioxygenase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology. (457 aa)
	APE12010.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (444 aa)
	APE08219.1	NAD(P)-dependent alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (339 aa)
	APE12040.1	Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology. (290 aa)
	APE09175.1	Arylsulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (775 aa)
	APE09668.1	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (375 aa)
	APE09875.1	S-(hydroxymethyl)mycothiol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (361 aa)
	APE10040.1	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (368 aa)
	APE10084.1	Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)
	APE10121.1	Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (362 aa)
	APE10340.1	Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)
	APE10488.1	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (369 aa)
	APE10569.1	AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (168 aa)
	APE10915.1	Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (434 aa)
	APE11319.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (123 aa)
	APE11320.1	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (369 aa)
	BO226_21485	Polyketide cyclase; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (375 aa)
	APE11536.1	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (279 aa)
	APE11779.1	2,3-dihydroxybiphenyl 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (299 aa)
	APE11823.1	2,3-dihydroxybiphenyl 1,2-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (307 aa)

Your Current Organism:

Rhodococcus sp. 2G

NCBI taxonomy Id: 1570939
Other names: R. sp. 2G

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APE08219.1	APE09668.1	BO226_02435	BO226_11020	NAD(P)-dependent alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.584
APE08219.1	APE09875.1	BO226_02435	BO226_12185	NAD(P)-dependent alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	S-(hydroxymethyl)mycothiol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.576
APE08219.1	APE10040.1	BO226_02435	BO226_13225	NAD(P)-dependent alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.593
APE08219.1	APE10488.1	BO226_02435	BO226_15820	NAD(P)-dependent alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.594
APE08219.1	APE11320.1	BO226_02435	BO226_20715	NAD(P)-dependent alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.583
APE08219.1	APE12010.1	BO226_02435	BO226_02425	NAD(P)-dependent alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.723
APE08219.1	BO226_21485	BO226_02435	BO226_21485	NAD(P)-dependent alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide cyclase; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.588
APE09175.1	APE11319.1	BO226_08050	BO226_20710	Arylsulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.769
APE09668.1	APE08219.1	BO226_11020	BO226_02435	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NAD(P)-dependent alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.584
APE09668.1	APE10084.1	BO226_11020	BO226_13465	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.551
APE09668.1	APE10121.1	BO226_11020	BO226_13665	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.551
APE09668.1	APE10340.1	BO226_11020	BO226_14950	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.551
APE09668.1	APE10915.1	BO226_11020	BO226_18340	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.551
APE09875.1	APE08219.1	BO226_12185	BO226_02435	S-(hydroxymethyl)mycothiol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NAD(P)-dependent alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.576
APE09875.1	APE10084.1	BO226_12185	BO226_13465	S-(hydroxymethyl)mycothiol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.551
APE09875.1	APE10121.1	BO226_12185	BO226_13665	S-(hydroxymethyl)mycothiol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.551
APE09875.1	APE10340.1	BO226_12185	BO226_14950	S-(hydroxymethyl)mycothiol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.551
APE09875.1	APE10915.1	BO226_12185	BO226_18340	S-(hydroxymethyl)mycothiol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.551
APE10040.1	APE08219.1	BO226_13225	BO226_02435	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NAD(P)-dependent alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.593
APE10040.1	APE10084.1	BO226_13225	BO226_13465	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.551