(7 nodes) Carbohydrate transmembrane transporter activity network (Rhodococcus sp. 2G)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APE08217.1	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (321 aa)
	APE08862.1	PTS lactose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology. (696 aa)
	APE10719.1	Glycerol-3-phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (308 aa)
	APE11155.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (357 aa)
	APE11775.1	IS1380 family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (466 aa)
	APE08487.1	IS1380 family transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (466 aa)
	APE08300.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (316 aa)

Your Current Organism:

Rhodococcus sp. 2G

NCBI taxonomy Id: 1570939
Other names: R. sp. 2G

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APE08217.1	APE08300.1	BO226_02420	BO226_02920	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.431
APE08217.1	APE08862.1	BO226_02420	BO226_06180	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS lactose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.445
APE08217.1	APE11155.1	BO226_02420	BO226_19750	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.479
APE08300.1	APE08217.1	BO226_02920	BO226_02420	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.431
APE08300.1	APE08862.1	BO226_02920	BO226_06180	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS lactose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.445
APE08300.1	APE10719.1	BO226_02920	BO226_17190	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycerol-3-phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.642
APE08862.1	APE08217.1	BO226_06180	BO226_02420	PTS lactose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.445
APE08862.1	APE08300.1	BO226_06180	BO226_02920	PTS lactose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.445
APE08862.1	APE10719.1	BO226_06180	BO226_17190	PTS lactose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycerol-3-phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.445
APE08862.1	APE11155.1	BO226_06180	BO226_19750	PTS lactose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.445
APE10719.1	APE08300.1	BO226_17190	BO226_02920	Glycerol-3-phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.642
APE10719.1	APE08862.1	BO226_17190	BO226_06180	Glycerol-3-phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS lactose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.445
APE10719.1	APE11155.1	BO226_17190	BO226_19750	Glycerol-3-phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.656
APE11155.1	APE08217.1	BO226_19750	BO226_02420	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.479
APE11155.1	APE08862.1	BO226_19750	BO226_06180	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	PTS lactose transporter subunit IIC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.445
APE11155.1	APE10719.1	BO226_19750	BO226_17190	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycerol-3-phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.656