(8 nodes) Protein kinase domain network (Rhodococcus sp. 2G)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APE08126.1	Protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1166 aa)
	APE09078.1	Protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1410 aa)
	APE09575.1	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (680 aa)
	APE10045.1	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (398 aa)
	APE12295.1	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (699 aa)
	APE11249.1	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (634 aa)
	APE11250.1	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (521 aa)
	APE11437.1	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (443 aa)

Your Current Organism:

Rhodococcus sp. 2G

NCBI taxonomy Id: 1570939
Other names: R. sp. 2G

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APE08126.1	APE09575.1	BO226_01900	BO226_10475	Protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.426
APE08126.1	APE11249.1	BO226_01900	BO226_20300	Protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.423
APE08126.1	APE11437.1	BO226_01900	BO226_21370	Protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.422
APE09575.1	APE08126.1	BO226_10475	BO226_01900	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.426
APE09575.1	APE10045.1	BO226_10475	BO226_13250	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.777
APE09575.1	APE11249.1	BO226_10475	BO226_20300	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.651
APE09575.1	APE11250.1	BO226_10475	BO226_20305	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.766
APE09575.1	APE11437.1	BO226_10475	BO226_21370	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.626
APE09575.1	APE12295.1	BO226_10475	BO226_15150	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.492
APE10045.1	APE09575.1	BO226_13250	BO226_10475	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.777
APE10045.1	APE11249.1	BO226_13250	BO226_20300	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
APE10045.1	APE12295.1	BO226_13250	BO226_15150	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.432
APE11249.1	APE08126.1	BO226_20300	BO226_01900	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.423
APE11249.1	APE09575.1	BO226_20300	BO226_10475	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.651
APE11249.1	APE10045.1	BO226_20300	BO226_13250	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.773
APE11249.1	APE11250.1	BO226_20300	BO226_20305	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.985
APE11249.1	APE11437.1	BO226_20300	BO226_21370	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.625
APE11249.1	APE12295.1	BO226_20300	BO226_15150	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.732
APE11250.1	APE09575.1	BO226_20305	BO226_10475	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.766
APE11250.1	APE11249.1	BO226_20305	BO226_20300	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.985