21 items (Rhodococcus sp. 2G) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APE12263.1	2,4-dienoyl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (663 aa)
	APE10157.1	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (421 aa)
	APE10181.1	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (558 aa)
	BO226_14850	Transcriptional regulator; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (467 aa)
	APE10385.1	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (465 aa)
	APE10476.1	Ferredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (426 aa)
	APE10598.1	Alkyl hydroperoxide reductase subunit F; Derived by automated computational analysis using gene prediction method: Protein Homology. (531 aa)
	APE10726.1	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (558 aa)
	APE11211.1	Thioredoxin-disulfide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (321 aa)
	gltD	Glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; Derived by automated computational analysis using gene prediction method: Protein Homology. (483 aa)
	APE11405.1	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (457 aa)
	APE12474.1	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (407 aa)
	APE11920.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (708 aa)
	APE11986.1	Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (395 aa)
	APE08204.1	Thioredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (325 aa)
	APE08664.1	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (413 aa)
	APE08797.1	Mycothione reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (457 aa)
	APE09317.1	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (487 aa)
	APE09348.1	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (479 aa)
	APE09917.1	Nitrite reductase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. (838 aa)
	APE09998.1	NAD(P)H-quinone dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (465 aa)

Your Current Organism:

Rhodococcus sp. 2G

NCBI taxonomy Id: 1570939
Other names: R. sp. 2G

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APE08204.1	APE08797.1	BO226_02335	BO226_05810	Thioredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mycothione reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.514
APE08204.1	APE09317.1	BO226_02335	BO226_08940	Thioredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.406
APE08204.1	APE09998.1	BO226_02335	BO226_12970	Thioredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NAD(P)H-quinone dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.400
APE08204.1	APE10181.1	BO226_02335	BO226_14010	Thioredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.582
APE08204.1	APE10598.1	BO226_02335	BO226_16490	Thioredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alkyl hydroperoxide reductase subunit F; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.459
APE08204.1	APE10726.1	BO226_02335	BO226_17235	Thioredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.582
APE08204.1	APE11211.1	BO226_02335	BO226_20070	Thioredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioredoxin-disulfide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.708
APE08204.1	APE11920.1	BO226_02335	BO226_24240	Thioredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.654
APE08204.1	APE12263.1	BO226_02335	BO226_13775	Thioredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2,4-dienoyl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.580
APE08204.1	BO226_14850	BO226_02335	BO226_14850	Thioredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.400
APE08664.1	APE09917.1	BO226_05065	BO226_12475	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrite reductase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.	0.632
APE08664.1	APE10157.1	BO226_05065	BO226_13880	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.766
APE08664.1	APE11920.1	BO226_05065	BO226_24240	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.460
APE08664.1	APE12263.1	BO226_05065	BO226_13775	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2,4-dienoyl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.429
APE08664.1	APE12474.1	BO226_05065	BO226_22525	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.402
APE08797.1	APE08204.1	BO226_05810	BO226_02335	Mycothione reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.514
APE08797.1	APE10181.1	BO226_05810	BO226_14010	Mycothione reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.545
APE08797.1	APE10726.1	BO226_05810	BO226_17235	Mycothione reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.545
APE08797.1	APE11211.1	BO226_05810	BO226_20070	Mycothione reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thioredoxin-disulfide reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.625
APE08797.1	APE12263.1	BO226_05810	BO226_13775	Mycothione reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2,4-dienoyl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.523