13 items (Rhodococcus sp. 2G) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APE08312.1	4-hydroxyacetophenone monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (520 aa)
	APE08627.1	Potassium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (485 aa)
	APE12263.1	2,4-dienoyl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (663 aa)
	APE10140.1	2,4-dienoyl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (633 aa)
	APE10181.1	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (558 aa)
	APE10208.1	FAD-linked oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (423 aa)
	APE12310.1	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (664 aa)
	APE10466.1	Cyclohexanone monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (551 aa)
	APE10726.1	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (558 aa)
	APE10912.1	Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (539 aa)
	APE11667.1	Cyclohexanone monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (501 aa)
	APE11774.1	3-ketosteroid-delta-1-dehydrogenase; Initiates steroid ring degradation; catalyzes the transhydrogenation of 3-keto-4-ene-steroid to 3-keto-1,4-diene-steroid e.g., progesterone to 1,4-androstadiene-3,17-dione; Derived by automated computational analysis using gene prediction method: Protein Homology. (573 aa)
	APE11920.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (708 aa)

Your Current Organism:

Rhodococcus sp. 2G

NCBI taxonomy Id: 1570939
Other names: R. sp. 2G

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APE08312.1	APE10466.1	BO226_02985	BO226_15700	4-hydroxyacetophenone monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cyclohexanone monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.543
APE08627.1	APE11920.1	BO226_04845	BO226_24240	Potassium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.440
APE08627.1	APE12263.1	BO226_04845	BO226_13775	Potassium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	2,4-dienoyl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.437
APE10140.1	APE10181.1	BO226_13785	BO226_14010	2,4-dienoyl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.852
APE10140.1	APE10726.1	BO226_13785	BO226_17235	2,4-dienoyl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.852
APE10140.1	APE11920.1	BO226_13785	BO226_24240	2,4-dienoyl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.884
APE10140.1	APE12263.1	BO226_13785	BO226_13775	2,4-dienoyl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	2,4-dienoyl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.961
APE10181.1	APE10140.1	BO226_14010	BO226_13785	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	2,4-dienoyl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.852
APE10181.1	APE10726.1	BO226_14010	BO226_17235	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.932
APE10181.1	APE11774.1	BO226_14010	BO226_23420	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-ketosteroid-delta-1-dehydrogenase; Initiates steroid ring degradation; catalyzes the transhydrogenation of 3-keto-4-ene-steroid to 3-keto-1,4-diene-steroid e.g., progesterone to 1,4-androstadiene-3,17-dione; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.423
APE10181.1	APE11920.1	BO226_14010	BO226_24240	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.736
APE10181.1	APE12263.1	BO226_14010	BO226_13775	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	2,4-dienoyl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.754
APE10466.1	APE08312.1	BO226_15700	BO226_02985	Cyclohexanone monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-hydroxyacetophenone monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.543
APE10466.1	APE11667.1	BO226_15700	BO226_22780	Cyclohexanone monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cyclohexanone monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.535
APE10466.1	APE12310.1	BO226_15700	BO226_15695	Cyclohexanone monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.895
APE10726.1	APE10140.1	BO226_17235	BO226_13785	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	2,4-dienoyl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.852
APE10726.1	APE10181.1	BO226_17235	BO226_14010	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.932
APE10726.1	APE11774.1	BO226_17235	BO226_23420	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-ketosteroid-delta-1-dehydrogenase; Initiates steroid ring degradation; catalyzes the transhydrogenation of 3-keto-4-ene-steroid to 3-keto-1,4-diene-steroid e.g., progesterone to 1,4-androstadiene-3,17-dione; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.423
APE10726.1	APE11920.1	BO226_17235	BO226_24240	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.736
APE10726.1	APE12263.1	BO226_17235	BO226_13775	Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	2,4-dienoyl-CoA reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.754