19 items (Rhodococcus sp. 2G) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APE07849.1	RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (766 aa)
	APE07895.1	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (552 aa)
	mfd	Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1217 aa)
	deaD	ATP-dependent RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. (626 aa)
	APE08517.1	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (935 aa)
	APE08576.1	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (677 aa)
	APE08721.1	Recombinase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology. (737 aa)
	recG	ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. (763 aa)
	APE08874.1	DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (834 aa)
	APE08886.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (575 aa)
	APE08945.1	Recombinase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology. (577 aa)
	APE12121.1	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1072 aa)
	APE09102.1	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (701 aa)
	APE09289.1	DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (918 aa)
	uvrB	Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] (719 aa)
	APE09872.1	DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (479 aa)
	APE12230.1	ATP-dependent RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family. (554 aa)
	APE10813.1	Restriction endonuclease subunit R; Derived by automated computational analysis using gene prediction method: Protein Homology. (1146 aa)
	APE11699.1	DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (782 aa)

Your Current Organism:

Rhodococcus sp. 2G

NCBI taxonomy Id: 1570939
Other names: R. sp. 2G

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APE07895.1	APE08517.1	BO226_00505	BO226_04190	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.698
APE07895.1	APE08576.1	BO226_00505	BO226_04520	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.964
APE07895.1	APE12121.1	BO226_00505	BO226_07480	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.639
APE08517.1	APE07895.1	BO226_04190	BO226_00505	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.698
APE08517.1	APE08576.1	BO226_04190	BO226_04520	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.763
APE08517.1	APE08721.1	BO226_04190	BO226_05400	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Recombinase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
APE08517.1	APE08886.1	BO226_04190	BO226_06330	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.639
APE08517.1	APE08945.1	BO226_04190	BO226_06740	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Recombinase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.763
APE08517.1	APE09872.1	BO226_04190	BO226_12170	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.831
APE08517.1	APE12230.1	BO226_04190	BO226_12515	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent RNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family.	0.831
APE08517.1	deaD	BO226_04190	BO226_03130	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.	0.831
APE08576.1	APE07895.1	BO226_04520	BO226_00505	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.964
APE08576.1	APE08517.1	BO226_04520	BO226_04190	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.763
APE08576.1	APE08721.1	BO226_04520	BO226_05400	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Recombinase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.649
APE08576.1	APE08886.1	BO226_04520	BO226_06330	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.963
APE08576.1	APE08945.1	BO226_04520	BO226_06740	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Recombinase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.649
APE08576.1	APE12121.1	BO226_04520	BO226_07480	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.729
APE08721.1	APE08517.1	BO226_05400	BO226_04190	Recombinase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
APE08721.1	APE08576.1	BO226_05400	BO226_04520	Recombinase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology.	ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.649
APE08721.1	APE08945.1	BO226_05400	BO226_06740	Recombinase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology.	Recombinase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900