(11 nodes) Phosphopantetheine attachment site network (Rhodococcus sp. 2G)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APE10127.1	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (4665 aa)
	BO226_00835	Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (87 aa)
	APE08148.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (3541 aa)
	APE11998.1	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (4075 aa)
	APE09051.1	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (4582 aa)
	APE09329.1	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (7349 aa)
	APE10126.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (7396 aa)
	APE10128.1	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (5850 aa)
	APE12320.1	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (6249 aa)
	APE10846.1	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1653 aa)
	APE11907.1	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (2602 aa)

Your Current Organism:

Rhodococcus sp. 2G

NCBI taxonomy Id: 1570939
Other names: R. sp. 2G

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APE08148.1	APE09051.1	BO226_02010	BO226_07330	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.980
APE08148.1	APE09329.1	BO226_02010	BO226_09035	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.978
APE08148.1	APE10126.1	BO226_02010	BO226_13695	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.977
APE08148.1	APE10127.1	BO226_02010	BO226_13700	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.993
APE08148.1	APE10128.1	BO226_02010	BO226_13705	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.992
APE08148.1	APE10846.1	BO226_02010	BO226_17920	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APE08148.1	APE11907.1	BO226_02010	BO226_24160	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.470
APE08148.1	APE11998.1	BO226_02010	BO226_02015	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.871
APE08148.1	APE12320.1	BO226_02010	BO226_16120	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
APE08148.1	BO226_00835	BO226_02010	BO226_00835	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.949
APE09051.1	APE08148.1	BO226_07330	BO226_02010	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.980
APE09051.1	APE09329.1	BO226_07330	BO226_09035	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APE09051.1	APE10126.1	BO226_07330	BO226_13695	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
APE09051.1	APE10127.1	BO226_07330	BO226_13700	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
APE09051.1	APE10128.1	BO226_07330	BO226_13705	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.999
APE09051.1	APE10846.1	BO226_07330	BO226_17920	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APE09051.1	APE11907.1	BO226_07330	BO226_24160	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.879
APE09051.1	APE11998.1	BO226_07330	BO226_02015	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.959
APE09051.1	APE12320.1	BO226_07330	BO226_16120	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APE09051.1	BO226_00835	BO226_07330	BO226_00835	Non-ribosomal peptide synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.947