(7 nodes) Flavin reductase like domain network (Rhodococcus sp. 2G)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APE10213.1	Flavin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (201 aa)
	APE11826.1	Flavin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (171 aa)
	APE11780.1	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (195 aa)
	APE11391.1	Flavin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (188 aa)
	APE10514.1	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (164 aa)
	APE08463.1	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (160 aa)
	APE08413.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (392 aa)

Your Current Organism:

Rhodococcus sp. 2G

NCBI taxonomy Id: 1570939
Other names: R. sp. 2G

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APE08413.1	APE08463.1	BO226_03565	BO226_03870	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.478
APE08413.1	APE10514.1	BO226_03565	BO226_15975	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.408
APE08413.1	APE11391.1	BO226_03565	BO226_21120	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flavin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.508
APE08413.1	APE11780.1	BO226_03565	BO226_23455	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.416
APE08413.1	APE11826.1	BO226_03565	BO226_23715	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flavin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.460
APE08463.1	APE08413.1	BO226_03870	BO226_03565	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.478
APE08463.1	APE11826.1	BO226_03870	BO226_23715	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flavin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.623
APE10514.1	APE08413.1	BO226_15975	BO226_03565	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.408
APE10514.1	APE11780.1	BO226_15975	BO226_23455	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.744
APE10514.1	APE11826.1	BO226_15975	BO226_23715	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flavin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.635
APE11391.1	APE08413.1	BO226_21120	BO226_03565	Flavin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.508
APE11391.1	APE11826.1	BO226_21120	BO226_23715	Flavin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flavin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.646
APE11780.1	APE08413.1	BO226_23455	BO226_03565	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.416
APE11780.1	APE10514.1	BO226_23455	BO226_15975	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.744
APE11780.1	APE11826.1	BO226_23455	BO226_23715	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flavin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.637
APE11826.1	APE08413.1	BO226_23715	BO226_03565	Flavin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.460
APE11826.1	APE08463.1	BO226_23715	BO226_03870	Flavin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.623
APE11826.1	APE10514.1	BO226_23715	BO226_15975	Flavin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.635
APE11826.1	APE11391.1	BO226_23715	BO226_21120	Flavin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Flavin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.646
APE11826.1	APE11780.1	BO226_23715	BO226_23455	Flavin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.637