(12 nodes) Carotenoid biosynthesis network (Rhodococcus sp. 2G)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APE10912.1	Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (539 aa)
	APE09570.1	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (531 aa)
	APE09571.1	Caratenoid biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (292 aa)
	APE12188.1	Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (510 aa)
	APE12189.1	Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (305 aa)
	APE10257.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (105 aa)
	APE10294.1	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (530 aa)
	APE11711.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (402 aa)
	APE10911.1	Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)
	BO226_00310	PucR family transcriptional regulator; Incomplete; partial on complete genome; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (475 aa)
	APE08026.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (618 aa)
	APE09029.1	Lycopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (371 aa)

Your Current Organism:

Rhodococcus sp. 2G

NCBI taxonomy Id: 1570939
Other names: R. sp. 2G

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APE09029.1	APE09570.1	BO226_07205	BO226_10425	Lycopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.689
APE09029.1	APE09571.1	BO226_07205	BO226_10430	Lycopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Caratenoid biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.472
APE09029.1	APE10257.1	BO226_07205	BO226_14470	Lycopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.714
APE09029.1	APE10911.1	BO226_07205	BO226_18315	Lycopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.808
APE09029.1	APE10912.1	BO226_07205	BO226_18320	Lycopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
APE09029.1	APE12188.1	BO226_07205	BO226_10455	Lycopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.898
APE09029.1	APE12189.1	BO226_07205	BO226_10465	Lycopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.786
APE09570.1	APE09029.1	BO226_10425	BO226_07205	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lycopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.689
APE09570.1	APE09571.1	BO226_10425	BO226_10430	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Caratenoid biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.969
APE09570.1	APE10911.1	BO226_10425	BO226_18315	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.834
APE09570.1	APE12188.1	BO226_10425	BO226_10455	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.451
APE09570.1	APE12189.1	BO226_10425	BO226_10465	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.833
APE09571.1	APE09029.1	BO226_10430	BO226_07205	Caratenoid biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lycopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.472
APE09571.1	APE09570.1	BO226_10430	BO226_10425	Caratenoid biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.969
APE09571.1	APE10911.1	BO226_10430	BO226_18315	Caratenoid biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.532
APE09571.1	APE10912.1	BO226_10430	BO226_18320	Caratenoid biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.581
APE09571.1	APE12188.1	BO226_10430	BO226_10455	Caratenoid biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.600
APE09571.1	APE12189.1	BO226_10430	BO226_10465	Caratenoid biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.496
APE10257.1	APE09029.1	BO226_14470	BO226_07205	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Lycopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.714
APE10257.1	APE10911.1	BO226_14470	BO226_18315	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.601