STRINGSTRING
F9NUK8_9ACTN F9NUK8_9ACTN F9NVC7_9ACTN F9NVC7_9ACTN F9NU90_9ACTN F9NU90_9ACTN F9NU59_9ACTN F9NU59_9ACTN rpsA rpsA F9NU34_9ACTN F9NU34_9ACTN rplU rplU cgtA cgtA F9NTZ6_9ACTN F9NTZ6_9ACTN F9NTY2_9ACTN F9NTY2_9ACTN rpsT rpsT F9NTU5_9ACTN F9NTU5_9ACTN recO recO dnaG dnaG pdxS pdxS F9NTH3_9ACTN F9NTH3_9ACTN F9NT59_9ACTN F9NT59_9ACTN F9NT50_9ACTN F9NT50_9ACTN priA priA F9NSX9_9ACTN F9NSX9_9ACTN rpmE_1 rpmE_1 raiA raiA F9NSL4_9ACTN F9NSL4_9ACTN F9NSK4_9ACTN F9NSK4_9ACTN recN recN rpmB_1 rpmB_1 rpsO rpsO rpsB rpsB F9NXJ6_9ACTN F9NXJ6_9ACTN rplL rplL rplJ rplJ rpmG_2 rpmG_2 nuoN nuoN F9NWW5_9ACTN F9NWW5_9ACTN F9NXH3_9ACTN F9NXH3_9ACTN rpsI rpsI rplM rplM rplQ rplQ rpsK rpsK rpmJ_1 rpmJ_1 rplO rplO rpmD rpmD rpsE rpsE rplR rplR rpsH rpsH rpsN_2 rpsN_2 rplE rplE rplX rplX rplN rplN rpsQ rpsQ rpmC rpmC rpsC rpsC rplB rplB rplW rplW rplC rplC rpsJ rpsJ rpsG rpsG rplT rplT rpmI rpmI rpsP rpsP rpmF rpmF F9NV58_9ACTN F9NV58_9ACTN hup hup F9NV08_9ACTN F9NV08_9ACTN F9NWQ9_9ACTN F9NWQ9_9ACTN F9NWR0_9ACTN F9NWR0_9ACTN rpmH rpmH recF recF gyrB gyrB F9NXW0_9ACTN F9NXW0_9ACTN F9NY97_9ACTN F9NY97_9ACTN F9NVQ1_9ACTN F9NVQ1_9ACTN recR recR nth nth F9NVS7_9ACTN F9NVS7_9ACTN F9NVS8_9ACTN F9NVS8_9ACTN topA topA F9NVX1_9ACTN F9NVX1_9ACTN ccsB ccsB dtd dtd F9NW19_9ACTN F9NW19_9ACTN ngcE ngcE F9NW60_9ACTN F9NW60_9ACTN F9NW73_9ACTN F9NW73_9ACTN F9NW79_9ACTN F9NW79_9ACTN F9NWC9_9ACTN F9NWC9_9ACTN rplY rplY F9NUJ2_9ACTN F9NUJ2_9ACTN rpmE_2 rpmE_2 rpmB_2 rpmB_2 rpmG_1 rpmG_1 rpsN_1 rpsN_1 cobB-2 cobB-2 rpsR rpsR rpsF rpsF dnaB dnaB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
F9NUK8_9ACTNUnannotated protein. (304 aa)
F9NVC7_9ACTNUnannotated protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family. (524 aa)
F9NU90_9ACTNUnannotated protein. (388 aa)
F9NU59_9ACTNUnannotated protein. (159 aa)
rpsAUnannotated protein. (498 aa)
F9NU34_9ACTNUnannotated protein. (135 aa)
rplUUnannotated protein; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (102 aa)
cgtAUnannotated protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. (505 aa)
F9NTZ6_9ACTNUnannotated protein. (74 aa)
F9NTY2_9ACTNUnannotated protein. (222 aa)
rpsTUnannotated protein; Binds directly to 16S ribosomal RNA. (88 aa)
F9NTU5_9ACTNUnannotated protein. (716 aa)
recOUnannotated protein; Involved in DNA repair and RecF pathway recombination. (246 aa)
dnaGUnannotated protein; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (617 aa)
pdxSUnannotated protein; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family. (307 aa)
F9NTH3_9ACTNUnannotated protein. (364 aa)
F9NT59_9ACTNUnannotated protein. (427 aa)
F9NT50_9ACTNUnannotated protein. (476 aa)
priAUnannotated protein; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (669 aa)
F9NSX9_9ACTNUnannotated protein; Belongs to the Cob(I)alamin adenosyltransferase family. (227 aa)
rpmE_1Unannotated protein; Binds the 23S rRNA. (69 aa)
raiAUnannotated protein. (203 aa)
F9NSL4_9ACTNUnannotated protein. (917 aa)
F9NSK4_9ACTNUnannotated protein. (305 aa)
recNUnannotated protein; May be involved in recombinational repair of damaged DNA. (559 aa)
rpmB_1Unannotated protein; Belongs to the bacterial ribosomal protein bL28 family. (61 aa)
rpsOUnannotated protein; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (87 aa)
rpsBUnannotated protein; Belongs to the universal ribosomal protein uS2 family. (287 aa)
F9NXJ6_9ACTNUnannotated protein. (184 aa)
rplLUnannotated protein; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (130 aa)
rplJUnannotated protein; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (204 aa)
rpmG_2Unannotated protein; Belongs to the bacterial ribosomal protein bL33 family. (56 aa)
nuoNUnannotated protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family. (538 aa)
F9NWW5_9ACTNUnannotated protein. (152 aa)
F9NXH3_9ACTNUnannotated protein. (193 aa)
rpsIUnannotated protein; Belongs to the universal ribosomal protein uS9 family. (173 aa)
rplMUnannotated protein; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (161 aa)
rplQUnannotated protein. (185 aa)
rpsKUnannotated protein; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (135 aa)
rpmJ_1Unannotated protein; Belongs to the bacterial ribosomal protein bL36 family. (37 aa)
rplOUnannotated protein; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (146 aa)
rpmDUnannotated protein. (60 aa)
rpsEUnannotated protein; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. (215 aa)
rplRUnannotated protein; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (127 aa)
rpsHUnannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (135 aa)
rpsN_2Unannotated protein; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site. (61 aa)
rplEUnannotated protein; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (210 aa)
rplXUnannotated protein; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. (122 aa)
rplNUnannotated protein; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (122 aa)
rpsQUnannotated protein; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (90 aa)
rpmCUnannotated protein; Belongs to the universal ribosomal protein uL29 family. (77 aa)
rpsCUnannotated protein; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. (269 aa)
rplBUnannotated protein; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (278 aa)
rplWUnannotated protein; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. (102 aa)
rplCUnannotated protein; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. (223 aa)
rpsJUnannotated protein; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (103 aa)
rpsGUnannotated protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (156 aa)
rplTUnannotated protein; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (123 aa)
rpmIUnannotated protein; Belongs to the bacterial ribosomal protein bL35 family. (68 aa)
rpsPUnannotated protein; Belongs to the bacterial ribosomal protein bS16 family. (212 aa)
rpmFUnannotated protein; Belongs to the bacterial ribosomal protein bL32 family. (63 aa)
F9NV58_9ACTNUnannotated protein. (311 aa)
hupUnannotated protein; Belongs to the bacterial histone-like protein family. (91 aa)
F9NV08_9ACTNUnannotated protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (244 aa)
F9NWQ9_9ACTNUnannotated protein; Belongs to the ParB family. (304 aa)
F9NWR0_9ACTNUnannotated protein. (328 aa)
rpmHUnannotated protein; Belongs to the bacterial ribosomal protein bL34 family. (44 aa)
recFUnannotated protein; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. (394 aa)
gyrBUnannotated protein; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (690 aa)
F9NXW0_9ACTNUnannotated protein. (492 aa)
F9NY97_9ACTNUnannotated protein. (634 aa)
F9NVQ1_9ACTNUnannotated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (107 aa)
recRUnannotated protein; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (201 aa)
nthUnannotated protein; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (275 aa)
F9NVS7_9ACTNUnannotated protein. (388 aa)
F9NVS8_9ACTNUnannotated protein. (256 aa)
topAUnannotated protein; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (935 aa)
F9NVX1_9ACTNUnannotated protein. (172 aa)
ccsBUnannotated protein. (297 aa)
dtdUnannotated protein; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family. (145 aa)
F9NW19_9ACTNUnannotated protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (245 aa)
ngcEUnannotated protein. (472 aa)
F9NW60_9ACTNUnannotated protein. (478 aa)
F9NW73_9ACTNUnannotated protein. (429 aa)
F9NW79_9ACTNUnannotated protein. (231 aa)
F9NWC9_9ACTNUnannotated protein; Belongs to the CutC family. (228 aa)
rplYUnannotated protein; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. (205 aa)
F9NUJ2_9ACTNUnannotated protein. (863 aa)
rpmE_2Unannotated protein. (81 aa)
rpmB_2Unannotated protein; Belongs to the bacterial ribosomal protein bL28 family. (78 aa)
rpmG_1Unannotated protein; Belongs to the bacterial ribosomal protein bL33 family. (56 aa)
rpsN_1Unannotated protein; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. (101 aa)
cobB-2Unannotated protein; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class U subfamily. (243 aa)
rpsRUnannotated protein; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (79 aa)
rpsFUnannotated protein; Binds together with S18 to 16S ribosomal RNA. (96 aa)
dnaBUnannotated protein; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (448 aa)
Your Current Organism:
Propionibacterium namnetense
NCBI taxonomy Id: 1574624
Other names: CCUG 66358, Cutibacterium namnetense, DSM 29427, Propionibacterium namnetense Aubin et al. 2016, Propionibacterium sp. NTS 31307302, [. namnetense, [Propionibacterium] namnetense, strain NTS 31307302
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