(10 nodes) Mixed, incl. Nitrate assimilation, and Nitrate assimilation network (Streptomyces sp. PBH53)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AKN69722.1	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (962 aa)
	AKN69731.1	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (404 aa)
	AKN69732.1	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. (874 aa)
	AKN69733.1	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (116 aa)
	AKN70784.1	Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (180 aa)
	AKN71093.1	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (534 aa)
	AKN75390.1	Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (457 aa)
	AKN72916.1	FeS-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (142 aa)
	AKN73271.1	(Fe-S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (74 aa)
	AKN73821.1	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (390 aa)

Your Current Organism:

Streptomyces sp. PBH53

NCBI taxonomy Id: 1577075
Other names: S. sp. PBH53

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKN69722.1	AKN69731.1	QR97_07695	QR97_07740	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997
AKN69722.1	AKN69732.1	QR97_07695	QR97_07745	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.	0.988
AKN69722.1	AKN69733.1	QR97_07695	QR97_07750	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
AKN69722.1	AKN70784.1	QR97_07695	QR97_14035	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.427
AKN69722.1	AKN71093.1	QR97_07695	QR97_15860	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.501
AKN69722.1	AKN73271.1	QR97_07695	QR97_29070	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	(Fe-S)-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.479
AKN69722.1	AKN75390.1	QR97_07695	QR97_17400	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.984
AKN69731.1	AKN69722.1	QR97_07740	QR97_07695	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.997
AKN69731.1	AKN69732.1	QR97_07740	QR97_07745	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.	0.990
AKN69731.1	AKN69733.1	QR97_07740	QR97_07750	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AKN69731.1	AKN70784.1	QR97_07740	QR97_14035	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.564
AKN69731.1	AKN71093.1	QR97_07740	QR97_15860	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.843
AKN69731.1	AKN72916.1	QR97_07740	QR97_26975	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	FeS-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.839
AKN69731.1	AKN73821.1	QR97_07740	QR97_32490	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.430
AKN69731.1	AKN75390.1	QR97_07740	QR97_17400	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.978
AKN69732.1	AKN69722.1	QR97_07745	QR97_07695	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.988
AKN69732.1	AKN69731.1	QR97_07745	QR97_07740	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.990
AKN69732.1	AKN69733.1	QR97_07745	QR97_07750	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AKN69732.1	AKN70784.1	QR97_07745	QR97_14035	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.	Nitrate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.700
AKN69732.1	AKN71093.1	QR97_07745	QR97_15860	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.	Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.843