(7 nodes) Oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor network (Streptomyces sp. PBH53)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	gltD-2	Glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; Derived by automated computational analysis using gene prediction method: Protein Homology. (495 aa)
	AKN71315.1	NAD-glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1647 aa)
	AKN71406.1	Valine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (368 aa)
	AKN75415.1	Glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (359 aa)
	AKN72843.1	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1511 aa)
	gltD	Glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; Derived by automated computational analysis using gene prediction method: Protein Homology. (487 aa)
	AKN74554.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (350 aa)

Your Current Organism:

Streptomyces sp. PBH53

NCBI taxonomy Id: 1577075
Other names: S. sp. PBH53

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKN71315.1	AKN71406.1	QR97_17230	QR97_17800	NAD-glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Valine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.456
AKN71315.1	AKN72843.1	QR97_17230	QR97_26565	NAD-glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.961
AKN71315.1	AKN74554.1	QR97_17230	QR97_36800	NAD-glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.456
AKN71315.1	AKN75415.1	QR97_17230	QR97_19355	NAD-glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.898
AKN71315.1	gltD	QR97_17230	QR97_26570	NAD-glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.896
AKN71315.1	gltD-2	QR97_17230	QR97_27115	NAD-glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.896
AKN71406.1	AKN71315.1	QR97_17800	QR97_17230	Valine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	NAD-glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.456
AKN71406.1	AKN72843.1	QR97_17800	QR97_26565	Valine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AKN71406.1	AKN75415.1	QR97_17800	QR97_19355	Valine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.563
AKN71406.1	gltD	QR97_17800	QR97_26570	Valine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.679
AKN71406.1	gltD-2	QR97_17800	QR97_27115	Valine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.679
AKN72843.1	AKN71315.1	QR97_26565	QR97_17230	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NAD-glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.961
AKN72843.1	AKN71406.1	QR97_26565	QR97_17800	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Valine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.999
AKN72843.1	AKN74554.1	QR97_26565	QR97_36800	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.999
AKN72843.1	AKN75415.1	QR97_26565	QR97_19355	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.999
AKN72843.1	gltD	QR97_26565	QR97_26570	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AKN72843.1	gltD-2	QR97_26565	QR97_27115	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AKN74554.1	AKN71315.1	QR97_36800	QR97_17230	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	NAD-glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.456
AKN74554.1	AKN72843.1	QR97_36800	QR97_26565	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
AKN74554.1	AKN75415.1	QR97_36800	QR97_19355	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.653