(28 nodes) Nitrogen metabolism network (Streptomyces sp. PBH53)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AKN75040.1	Membrane dipeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (397 aa)
	AKN68483.1	Peptidase M19; Derived by automated computational analysis using gene prediction method: Protein Homology. (367 aa)
	AKN68906.1	Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (469 aa)
	AKN68919.1	Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. (343 aa)
	AKN68939.1	Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutamine synthetase family. (453 aa)
	AKN69731.1	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (404 aa)
	AKN69732.1	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family. (874 aa)
	AKN69733.1	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (116 aa)
	AKN69792.1	2-nitropropane dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (362 aa)
	AKN70519.1	F5/8 type C domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (689 aa)
	AKN71209.1	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (781 aa)
	AKN71315.1	NAD-glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1647 aa)
	AKN75390.1	Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (457 aa)
	AKN71535.1	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (289 aa)
	AKN75415.1	Glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (359 aa)
	AKN71770.1	Carbonic anhydrase; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)
	AKN72022.1	Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutamine synthetase family. (456 aa)
	AKN72189.1	Sulfate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (492 aa)
	AKN72190.1	Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family. (192 aa)
	AKN72843.1	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1511 aa)
	gltD	Glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; Derived by automated computational analysis using gene prediction method: Protein Homology. (487 aa)
	gltD-2	Glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; Derived by automated computational analysis using gene prediction method: Protein Homology. (495 aa)
	AKN73053.1	Carbonic anhydrase; Derived by automated computational analysis using gene prediction method: Protein Homology. (182 aa)
	AKN73167.1	Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (370 aa)
	AKN73406.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (109 aa)
	AKN73821.1	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (390 aa)
	AKN74414.1	Nitrogen fixation protein NifU; Derived by automated computational analysis using gene prediction method: Protein Homology. (182 aa)
	AKN74823.1	Nitrilase; Derived by automated computational analysis using gene prediction method: Protein Homology. (319 aa)

Your Current Organism:

Streptomyces sp. PBH53

NCBI taxonomy Id: 1577075
Other names: S. sp. PBH53

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKN68483.1	AKN75040.1	QR97_00410	QR97_00405	Peptidase M19; Derived by automated computational analysis using gene prediction method: Protein Homology.	Membrane dipeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.814
AKN68906.1	AKN68919.1	QR97_02945	QR97_03010	Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.962
AKN68906.1	AKN68939.1	QR97_02945	QR97_03125	Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutamine synthetase family.	0.914
AKN68906.1	AKN69731.1	QR97_02945	QR97_07740	Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.654
AKN68906.1	AKN69732.1	QR97_02945	QR97_07745	Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.	0.963
AKN68906.1	AKN69733.1	QR97_02945	QR97_07750	Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.926
AKN68906.1	AKN71209.1	QR97_02945	QR97_16605	Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.543
AKN68906.1	AKN71315.1	QR97_02945	QR97_17230	Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	NAD-glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.947
AKN68906.1	AKN71535.1	QR97_02945	QR97_18535	Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.738
AKN68906.1	AKN72022.1	QR97_02945	QR97_21510	Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutamine synthetase family.	0.905
AKN68906.1	AKN72189.1	QR97_02945	QR97_22565	Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sulfate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.627
AKN68906.1	AKN72843.1	QR97_02945	QR97_26565	Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.987
AKN68906.1	AKN74823.1	QR97_02945	QR97_38490	Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrilase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.878
AKN68906.1	AKN75415.1	QR97_02945	QR97_19355	Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.904
AKN68906.1	gltD	QR97_02945	QR97_26570	Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.932
AKN68906.1	gltD-2	QR97_02945	QR97_27115	Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.932
AKN68919.1	AKN68906.1	QR97_03010	QR97_02945	Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.962
AKN68919.1	AKN68939.1	QR97_03010	QR97_03125	Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutamine synthetase family.	0.896
AKN68919.1	AKN69731.1	QR97_03010	QR97_07740	Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.637
AKN68919.1	AKN69732.1	QR97_03010	QR97_07745	Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nitrite reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.	0.940