Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| BN1209_0858 | bamE | BN1209_0858 | BN1209_1290 | Outer membrane chaperone Skp (OmpH); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component;fragment of putative outer membrane protein (part 2); Belongs to the skp family. | Exported protein of unknown function; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.421 |
| BN1209_0858 | fabZ | BN1209_0858 | BN1209_0860 | Outer membrane chaperone Skp (OmpH); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component;fragment of putative outer membrane protein (part 2); Belongs to the skp family. | (3R)-hydroxymyristol acyl carrier protein dehydratase; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs. | 0.749 |
| BN1209_0858 | lptE | BN1209_0858 | BN1209_0400 | Outer membrane chaperone Skp (OmpH); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component;fragment of putative outer membrane protein (part 2); Belongs to the skp family. | Rare lipoprotein B; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane; Belongs to the LptE lipoprotein family. | 0.496 |
| BN1209_0858 | lpxA | BN1209_0858 | BN1209_0861 | Outer membrane chaperone Skp (OmpH); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component;fragment of putative outer membrane protein (part 2); Belongs to the skp family. | UDP-N-acetylglucosamine acetyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.713 |
| BN1209_0858 | lpxD | BN1209_0858 | BN1209_0859 | Outer membrane chaperone Skp (OmpH); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative membrane component;fragment of putative outer membrane protein (part 2); Belongs to the skp family. | UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily. | 0.869 |
| CEN55168.1 | CEN55171.1 | BN1209_0114 | BN1209_0117 | Methylase of polypeptide chain release factors; Belongs to the methyltransferase superfamily. | PEP-protein phosphotransferase of PTS system (enzyme I) (fragment). | 0.592 |
| CEN55168.1 | CEN55181.1 | BN1209_0114 | BN1209_0127 | Methylase of polypeptide chain release factors; Belongs to the methyltransferase superfamily. | Homologs of previously reported genes of unknown function. | 0.447 |
| CEN55168.1 | hprK | BN1209_0114 | BN1209_0122 | Methylase of polypeptide chain release factors; Belongs to the methyltransferase superfamily. | HPr kinase/phosphorylase; Catalyzes the ATP- as well as the pyrophosphate-dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK/P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P-Ser-HPr). | 0.401 |
| CEN55168.1 | prlC | BN1209_0114 | BN1209_0116 | Methylase of polypeptide chain release factors; Belongs to the methyltransferase superfamily. | Oligopeptidase A. | 0.727 |
| CEN55168.1 | ptsH | BN1209_0114 | BN1209_0119 | Methylase of polypeptide chain release factors; Belongs to the methyltransferase superfamily. | Phosphocarrier protein HPr. | 0.405 |
| CEN55171.1 | CEN55168.1 | BN1209_0117 | BN1209_0114 | PEP-protein phosphotransferase of PTS system (enzyme I) (fragment). | Methylase of polypeptide chain release factors; Belongs to the methyltransferase superfamily. | 0.592 |
| CEN55171.1 | CEN55172.1 | BN1209_0117 | BN1209_0118 | PEP-protein phosphotransferase of PTS system (enzyme I) (fragment). | Phosphoenolpyruvate-protein phosphotransferase (fragment); Belongs to the PEP-utilizing enzyme family. | 0.987 |
| CEN55171.1 | CEN55174.1 | BN1209_0117 | BN1209_0120 | PEP-protein phosphotransferase of PTS system (enzyme I) (fragment). | PTS system fructose subfamily IIA component. | 0.758 |
| CEN55171.1 | hprK | BN1209_0117 | BN1209_0122 | PEP-protein phosphotransferase of PTS system (enzyme I) (fragment). | HPr kinase/phosphorylase; Catalyzes the ATP- as well as the pyrophosphate-dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK/P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P-Ser-HPr). | 0.798 |
| CEN55171.1 | kdsD | BN1209_0117 | BN1209_0129 | PEP-protein phosphotransferase of PTS system (enzyme I) (fragment). | D-arabinose 5-phosphate isomerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the SIS family. GutQ/KpsF subfamily. | 0.438 |
| CEN55171.1 | ltpA | BN1209_0117 | BN1209_0126 | PEP-protein phosphotransferase of PTS system (enzyme I) (fragment). | Lipopolysaccharide transport periplasmic protein LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. | 0.410 |
| CEN55171.1 | prlC | BN1209_0117 | BN1209_0116 | PEP-protein phosphotransferase of PTS system (enzyme I) (fragment). | Oligopeptidase A. | 0.628 |
| CEN55171.1 | ptsH | BN1209_0117 | BN1209_0119 | PEP-protein phosphotransferase of PTS system (enzyme I) (fragment). | Phosphocarrier protein HPr. | 0.996 |
| CEN55171.1 | yhbH | BN1209_0117 | BN1209_0123 | PEP-protein phosphotransferase of PTS system (enzyme I) (fragment). | Ribosome-associated, sigma 54 modulation protein; Function of strongly homologous gene; factor. | 0.542 |
| CEN55171.1 | yhbJ | BN1209_0117 | BN1209_0121 | PEP-protein phosphotransferase of PTS system (enzyme I) (fragment). | Hypothetical protein; Displays ATPase and GTPase activities. | 0.509 |
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