Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ADY11848.1 | ADY12700.1 | SpiBuddy_0002 | SpiBuddy_0873 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | KEGG: vpr:Vpar_0406 exonuclease RNase T and DNA polymerase III; PFAM: Exonuclease, RNase T/DNA polymerase III; SMART: Exonuclease. | 0.979 |
| ADY11848.1 | ADY12992.1 | SpiBuddy_0002 | SpiBuddy_1167 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | TIGRFAM: Exodeoxyribonuclease III xth; AP endonuclease, family 1; KEGG: fnu:FN0047 exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase. | 0.716 |
| ADY11848.1 | ADY13350.1 | SpiBuddy_0002 | SpiBuddy_1525 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | TIGRFAM: DNA polymerase III, alpha subunit; KEGG: dol:Dole_0237 DNA polymerase III, alpha subunit; PFAM: Bacterial DNA polymerase III, alpha subunit; Nucleic acid binding, OB-fold, tRNA/helicase-type. | 0.975 |
| ADY11848.1 | ADY13469.1 | SpiBuddy_0002 | SpiBuddy_1644 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | KEGG: ssm:Spirs_2141 single-stranded-DNA-specific exonuclease RecJ; TIGRFAM: Bacterial RecJ exonuclease; PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1. | 0.664 |
| ADY11848.1 | ADY14060.1 | SpiBuddy_0002 | SpiBuddy_2241 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | PFAM: DNA helicase, UvrD/REP type; KEGG: ssm:Spirs_3944 UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily. | 0.442 |
| ADY11848.1 | ADY14095.1 | SpiBuddy_0002 | SpiBuddy_2276 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | KEGG: cyb:CYB_2566 hypothetical protein. | 0.716 |
| ADY11848.1 | ADY14137.1 | SpiBuddy_0002 | SpiBuddy_2318 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | PFAM: Endonuclease/exonuclease/phosphatase; KEGG: ssm:Spirs_3694 endonuclease/exonuclease/phosphatase. | 0.765 |
| ADY11848.1 | ADY14727.1 | SpiBuddy_0002 | SpiBuddy_2919 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA polymerase III, alpha subunit; SMART: Polymerase/histidinol phosphatase, N-terminal; TIGRFAM: DNA polymerase III, alpha subunit; KEGG: ssm:Spirs_1327 DNA polymerase III, alpha subunit; PFAM: Bacterial DNA polymerase III, alpha subunit; PHP, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type. | 0.980 |
| ADY11848.1 | polA | SpiBuddy_0002 | SpiBuddy_0815 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.976 |
| ADY11848.1 | pth | SpiBuddy_0002 | SpiBuddy_0030 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. | 0.419 |
| ADY11848.1 | rnhB | SpiBuddy_0002 | SpiBuddy_1300 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.866 |
| ADY11848.1 | rnpA | SpiBuddy_0002 | SpiBuddy_0006 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.787 |
| ADY12056.1 | ADY12245.1 | SpiBuddy_0216 | SpiBuddy_0410 | PFAM: Domain of unknown function DUF303, acetylesterase putative; KEGG: ccb:Clocel_2697 sialate O-acetylesterase. | PFAM: Sulfatase; KEGG: sulfatase. | 0.616 |
| ADY12159.1 | ADY13060.1 | SpiBuddy_0323 | SpiBuddy_1235 | PFAM: Inositol monophosphatase; KEGG: mca:MCA2609 inositol monophosphatase family protein. | PFAM: Inositol monophosphatase; KEGG: ssm:Spirs_3133 inositol monophosphatase. | 0.673 |
| ADY12196.1 | ADY12212.1 | SpiBuddy_0360 | SpiBuddy_0376 | PFAM: Sulfatase; KEGG: sus:Acid_7475 arylsulfatase. | PFAM: Bacterial alpha-L-rhamnosidase; KEGG: phe:Phep_3974 alpha-L-rhamnosidase. | 0.820 |
| ADY12212.1 | ADY12196.1 | SpiBuddy_0376 | SpiBuddy_0360 | PFAM: Bacterial alpha-L-rhamnosidase; KEGG: phe:Phep_3974 alpha-L-rhamnosidase. | PFAM: Sulfatase; KEGG: sus:Acid_7475 arylsulfatase. | 0.820 |
| ADY12212.1 | ADY12245.1 | SpiBuddy_0376 | SpiBuddy_0410 | PFAM: Bacterial alpha-L-rhamnosidase; KEGG: phe:Phep_3974 alpha-L-rhamnosidase. | PFAM: Sulfatase; KEGG: sulfatase. | 0.446 |
| ADY12245.1 | ADY12056.1 | SpiBuddy_0410 | SpiBuddy_0216 | PFAM: Sulfatase; KEGG: sulfatase. | PFAM: Domain of unknown function DUF303, acetylesterase putative; KEGG: ccb:Clocel_2697 sialate O-acetylesterase. | 0.616 |
| ADY12245.1 | ADY12212.1 | SpiBuddy_0410 | SpiBuddy_0376 | PFAM: Sulfatase; KEGG: sulfatase. | PFAM: Bacterial alpha-L-rhamnosidase; KEGG: phe:Phep_3974 alpha-L-rhamnosidase. | 0.446 |
| ADY12439.1 | vapC | SpiBuddy_0610 | SpiBuddy_0694 | Protein of unknown function DUF132; KEGG: tte:TTE2037 nucleic acid-binding protein; TIGRFAM: Protein of unknown function DUF132; SMART: Nucleotide binding protein, PINc. | PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. | 0.411 |
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