STRINGSTRING
AEV27932.1 AEV27932.1 AEV27986.1 AEV27986.1 recO recO AEV27988.1 AEV27988.1 AEV28191.1 AEV28191.1 AEV28200.1 AEV28200.1 AEV28250.1 AEV28250.1 AEV28262.1 AEV28262.1 greA greA AEV28301.1 AEV28301.1 rpoD rpoD AEV28304.1 AEV28304.1 AEV28358.1 AEV28358.1 AEV28449.1 AEV28449.1 AEV28500.1 AEV28500.1 AEV28894.1 AEV28894.1 AEV28924.1 AEV28924.1 AEV28948.1 AEV28948.1 AEV29172.1 AEV29172.1 AEV29174.1 AEV29174.1 AEV29175.1 AEV29175.1 AEV29637.1 AEV29637.1 AEV29638.1 AEV29638.1 AEV29687.1 AEV29687.1 AEV29734.1 AEV29734.1 AEV29768.1 AEV29768.1 AEV29849.1 AEV29849.1 AEV29850.1 AEV29850.1 AEV29852.1 AEV29852.1 AEV29854.1 AEV29854.1 AEV29855.1 AEV29855.1 AEV29856.1 AEV29856.1 ligA ligA AEV29858.1 AEV29858.1 AEV29859.1 AEV29859.1 AEV29944.1 AEV29944.1 AEV29954.1 AEV29954.1 clpP-2 clpP-2 AEV30233.1 AEV30233.1 AEV30234.1 AEV30234.1 AEV30282.1 AEV30282.1 AEV30313.1 AEV30313.1 AEV30333.1 AEV30333.1 AEV30334.1 AEV30334.1 AEV30335.1 AEV30335.1 AEV30377.1 AEV30377.1 AEV30482.1 AEV30482.1 AEV30483.1 AEV30483.1 AEV30516.1 AEV30516.1 AEV30705.1 AEV30705.1 AEV30708.1 AEV30708.1 AEV30748.1 AEV30748.1 AEV30749.1 AEV30749.1 AEV30750.1 AEV30750.1 AEV30751.1 AEV30751.1 AEV30790.1 AEV30790.1 AEV30797.1 AEV30797.1 AEV30820.1 AEV30820.1 AEV30876.1 AEV30876.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AEV27932.1Putative membrane protein; PFAM: Bacterial protein of unknown function (DUF939). (171 aa)
AEV27986.1Hypothetical protein. (438 aa)
recODNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. (249 aa)
AEV27988.1PFAM: DHH family; DHHA1 domain; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ. (715 aa)
AEV28191.1Hypothetical protein. (192 aa)
AEV28200.1PFAM: Protein of unknown function (DUF2764). (177 aa)
AEV28250.1Site-specific recombinase XerD; PFAM: Phage integrase family; Belongs to the 'phage' integrase family. (404 aa)
AEV28262.1PFAM: Surface antigen variable number repeat; Surface antigen; TIGRFAM: outer membrane protein assembly complex, YaeT protein. (851 aa)
greAUncharacterized protein, N-terminal domain of transcription elongation factor GreA like protein; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. (906 aa)
AEV28301.1Zn-ribbon protein, possibly nucleic acid-binding protein; PFAM: Putative zinc ribbon domain. (272 aa)
rpoDRNA polymerase sigma factor, sigma-70 family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (685 aa)
AEV28304.1Putative Fe-S oxidoreductase; PFAM: Uncharacterised protein family (UPF0153). (151 aa)
AEV28358.1PFAM: Protein of unknown function (DUF3276). (83 aa)
AEV28449.1Hypothetical protein. (244 aa)
AEV28500.1Putative methicillin resistance protein; PFAM: FemAB family. (349 aa)
AEV28894.1PFAM: PPIC-type PPIASE domain. (533 aa)
AEV28924.1Tfp pilus assembly protein PilF. (357 aa)
AEV28948.1PFAM: DbpA RNA binding domain. (190 aa)
AEV29172.1Putative membrane protein. (206 aa)
AEV29174.1Putative membrane protein; PFAM: UPF0126 domain. (218 aa)
AEV29175.1Hypothetical protein. (199 aa)
AEV29637.1Hypothetical protein; PFAM: SlyX. (68 aa)
AEV29638.1Putative transcriptional regulator; PFAM: IclR helix-turn-helix domain. (322 aa)
AEV29687.1PFAM: Sodium:dicarboxylate symporter family; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. (415 aa)
AEV29734.1PFAM: Trehalase. (474 aa)
AEV29768.1PFAM: Bacterial regulatory helix-turn-helix proteins, AraC family. (1083 aa)
AEV29849.1PFAM: Acyl-ACP thioesterase. (275 aa)
AEV29850.1RNA methyltransferase, RsmD family; PFAM: Conserved hypothetical protein 95; TIGRFAM: RNA methyltransferase, RsmD family. (186 aa)
AEV29852.1PFAM: YGGT family. (218 aa)
AEV29854.1Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM-like protein; PFAM: FAD binding domain in molybdopterin dehydrogenase. (295 aa)
AEV29855.1Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS-like protein; PFAM: 2Fe-2S iron-sulfur cluster binding domain. (183 aa)
AEV29856.1Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL-like protein; PFAM: Molybdopterin-binding domain of aldehyde dehydrogenase. (651 aa)
ligADNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. (707 aa)
AEV29858.1PFAM: Aminotransferase class I and II. (432 aa)
AEV29859.1PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; TIGRFAM: ModE molybdate transport repressor domain. (129 aa)
AEV29944.1Hypothetical protein. (424 aa)
AEV29954.1Hypothetical protein. (588 aa)
clpP-2Protease subunit of ATP-dependent protease; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. (191 aa)
AEV30233.1PFAM: Major Facilitator Superfamily. (742 aa)
AEV30234.1PFAM: Endonuclease/Exonuclease/phosphatase family. (337 aa)
AEV30282.1Hypothetical protein. (235 aa)
AEV30313.1PFAM: Uncharacterised protein family (UPF0158). (326 aa)
AEV30333.1PFAM: CAAX amino terminal protease family. (299 aa)
AEV30334.1PFAM: Domain of unknown function DUF83. (874 aa)
AEV30335.1ATP-dependent exonuclase V beta subunit, helicase and exonuclease domain-containing; PFAM: UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily. (1134 aa)
AEV30377.1PFAM: Aminotransferase class-III; manually curated. (278 aa)
AEV30482.1CBS-domain-containing membrane protein; PFAM: CBS domain; ACT domain. (214 aa)
AEV30483.1Hypothetical protein; PFAM: Smr domain. (321 aa)
AEV30516.1Phosphomannomutase; PFAM: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I. (640 aa)
AEV30705.1Hypothetical protein. (494 aa)
AEV30708.1Putative Fe-S oxidoreductase; PFAM: Uncharacterised protein family (UPF0153). (212 aa)
AEV30748.1Hypothetical protein. (415 aa)
AEV30749.1Hypothetical protein. (213 aa)
AEV30750.1Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; PFAM: Bacterial regulatory proteins, luxR family. (295 aa)
AEV30751.1Esterase/lipase; PFAM: Lipase (class 3); Putative lysophospholipase. (278 aa)
AEV30790.1Putative TIM-barrel fold metal-dependent hydrolase; PFAM: Amidohydrolase. (412 aa)
AEV30797.1Hypothetical protein; PFAM: Caspase domain. (327 aa)
AEV30820.1Hypothetical protein. (445 aa)
AEV30876.1Hypothetical protein. (157 aa)
Your Current Organism:
Sphaerochaeta pleomorpha
NCBI taxonomy Id: 158190
Other names: S. pleomorpha str. Grapes, Sphaerochaeta pleomorpha str. Grapes, Sphaerochaeta sp. Grapes, Spirochaeta sp. Grapes
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