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| | AEV28234.1 | Diguanylate cyclase (GGDEF) domain-containing protein; PFAM: Metallo-beta-lactamase superfamily; GGDEF domain; Response regulator receiver domain; TIGRFAM: diguanylate cyclase (GGDEF) domain. (674 aa) |
| | ybeY | Metalloprotein, YbeY/UPF0054 family; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. (166 aa) |
| | uvrA | Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (944 aa) |
| | mutS2 | Mismatch repair ATPase (MutS family); Endonuclease that is involved in the suppression of homologous recombination and may therefore have a key role in the control of bacterial genetic diversity; Belongs to the DNA mismatch repair MutS family. MutS2 subfamily. (782 aa) |
| | AEV28190.1 | Zn-dependent hydrolase, glyoxylase; PFAM: Metallo-beta-lactamase superfamily. (202 aa) |
| | rnhA | Ribonuclease HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (151 aa) |
| | AEV28153.1 | 2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family. (177 aa) |
| | AEV31026.1 | Zn-dependent hydrolase, glyoxylase; PFAM: Metallo-beta-lactamase superfamily. (242 aa) |
| | AEV28103.1 | Hypothetical protein. (163 aa) |
| | AEV28095.1 | Putative domain HDIG-containing protein; PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG. (247 aa) |
| | AEV28091.1 | Hypothetical protein. (274 aa) |
| | AEV27988.1 | PFAM: DHH family; DHHA1 domain; TIGRFAM: single-stranded-DNA-specific exonuclease RecJ. (715 aa) |
| | valS | valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily. (884 aa) |
| | AEV27935.1 | PFAM: HD domain; Response regulator receiver domain. (356 aa) |
| | AEV28109.1 | PFAM: Bacterial DNA polymerase III alpha subunit; PHP domain; TIGRFAM: DNA-directed DNA polymerase III (polc). (983 aa) |
| | AEV30973.1 | TIGR00255 family protein; PFAM: YicC-like family, N-terminal region; Domain of unknown function (DUF1732); TIGRFAM: TIGR00255 family protein. (289 aa) |
| | cas2 | CRISPR-associated endoribonuclease Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (96 aa) |
| | cas1 | CRISPR-associated endonuclease Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (343 aa) |
| | AEV30967.1 | CRISPR-associated protein Cas4; CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Belongs to the CRISPR-associated exonuclease Cas4 family. (225 aa) |
| | AEV30964.1 | PFAM: CRISPR-associated protein (Cas_Cas5); TIGRFAM: CRISPR-associated protein Cas5, subtype I-C/DVULG; CRISPR-associated protein Cas5, N-terminal domain. (234 aa) |
| | AEV30838.1 | PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily; HAD-superfamily hydrolase, subfamily IIB. (261 aa) |
| | AEV30827.1 | Hydrolase, TatD family; PFAM: TatD related DNase; TIGRFAM: hydrolase, TatD family. (245 aa) |
| | uvrB | Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] (689 aa) |
| | AEV30778.1 | 5'-nucleotidase/2',3'-cyclic phosphodiesterase-like hydrolase; PFAM: Calcineurin-like phosphoesterase; 5'-nucleotidase, C-terminal domain. (942 aa) |
| | pth-2 | peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. (187 aa) |
| | AEV30751.1 | Esterase/lipase; PFAM: Lipase (class 3); Putative lysophospholipase. (278 aa) |
| | AEV30747.1 | Capsular polysaccharide biosynthesis protein. (211 aa) |
| | AEV30693.1 | ybaK/ebsC protein; PFAM: YbaK / prolyl-tRNA synthetases associated domain; TIGRFAM: ybaK/ebsC protein; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily. (159 aa) |
| | AEV30686.1 | PFAM: Inositol monophosphatase family. (264 aa) |
| | AEV30649.1 | PFAM: HD domain; Response regulator receiver domain. (364 aa) |
| | AEV30646.1 | PFAM: HD domain; Response regulator receiver domain. (369 aa) |
| | AEV30645.1 | PFAM: HD domain; Response regulator receiver domain. (372 aa) |
| | AEV30620.1 | Hypothetical protein. (295 aa) |
| | AEV30619.1 | PFAM: Type III restriction enzyme, res subunit. (1012 aa) |
| | AEV30609.1 | PFAM: Protein of unknown function (DUF2800). (374 aa) |
| | AEV30607.1 | PFAM: DNA polymerase family A. (646 aa) |
| | AEV30606.1 | Hypothetical protein. (143 aa) |
| | AEV30602.1 | VRR-NUC domain-containing protein; PFAM: VRR-NUC domain. (93 aa) |
| | AEV30597.1 | PFAM: HNH endonuclease; manually curated. (120 aa) |
| | AEV30527.1 | Zn-dependent hydrolase, glyoxylase; PFAM: Metallo-beta-lactamase superfamily. (253 aa) |
| | AEV30515.1 | DNA mismatch endonuclease Vsr; May nick specific sequences that contain T:G mispairs resulting from m5C-deamination. (141 aa) |
| | AEV30505.1 | PFAM: Exonuclease; Exonuclease C-terminal. (471 aa) |
| | AEV30497.1 | (p)ppGpp synthetase, RelA/SpoT family; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. (676 aa) |
| | AEV30483.1 | Hypothetical protein; PFAM: Smr domain. (321 aa) |
| | AEV30364.1 | Lysophospholipase L1-like esterase. (345 aa) |
| | AEV30335.1 | ATP-dependent exonuclase V beta subunit, helicase and exonuclease domain-containing; PFAM: UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily. (1134 aa) |
| | AEV30334.1 | PFAM: Domain of unknown function DUF83. (874 aa) |
| | AEV30299.1 | PFAM: DNA/RNA non-specific endonuclease. (349 aa) |
| | AEV30278.1 | Hypothetical protein. (469 aa) |
| | nfo | Apurinic endonuclease APN1; Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin. (279 aa) |
| | AEV30253.1 | PFAM: Glycerophosphoryl diester phosphodiesterase family. (259 aa) |
| | AEV30244.1 | Hypothetical protein. (688 aa) |
| | AEV30242.1 | 6-phosphogluconolactonase/glucosamine-6- phosphate isomerase/deaminase. (223 aa) |
| | AEV30234.1 | PFAM: Endonuclease/Exonuclease/phosphatase family. (337 aa) |
| | AEV30164.1 | Zn-dependent hydrolase, glyoxylase; PFAM: Metallo-beta-lactamase superfamily. (266 aa) |
| | AEV30140.1 | PFAM: HD domain; Response regulator receiver domain. (341 aa) |
| | AEV30128.1 | DNA polymerase III epsilon subunit-like 3'-5' exonuclease; PFAM: Exonuclease. (166 aa) |
| | AEV30103.1 | PFAM: 3'-5' exonuclease; HRDC domain. (295 aa) |
| | AEV30086.1 | Hypothetical protein. (320 aa) |
| | AEV30082.1 | PFAM: RNB domain; TIGRFAM: VacB and RNase II family 3'-5' exoribonucleases. (492 aa) |
| | AEV30030.1 | Putative AP superfamily protein; PFAM: Type I phosphodiesterase / nucleotide pyrophosphatase. (401 aa) |
| | AEV30024.1 | PAS domain S-box; PFAM: Stage II sporulation protein E (SpoIIE); TIGRFAM: PAS domain S-box. (852 aa) |
| | surE | 5'/3'-nucleotidase SurE; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family. (266 aa) |
| | AEV29960.1 | Hydrolase, TatD family; PFAM: TatD related DNase; TIGRFAM: hydrolase, TatD family. (260 aa) |
| | AEV29956.1 | 3-carboxymuconate cyclase; PFAM: 3-carboxy-cis,cis-muconate lactonizing enzyme. (335 aa) |
| | rny | Conserved hypothetical protein YmdA/YtgF; Endoribonuclease that initiates mRNA decay. (510 aa) |
| | AEV29884.1 | PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: HAD-superfamily hydrolase, subfamily IIB. (275 aa) |
| | AEV29877.1 | PFAM: Stage II sporulation protein E (SpoIIE). (397 aa) |
| | AEV29853.1 | PFAM: PHP domain; Bacterial DNA polymerase III alpha subunit; TIGRFAM: DNA-directed DNA polymerase III (polc). (1153 aa) |
| | AEV29849.1 | PFAM: Acyl-ACP thioesterase. (275 aa) |
| | proS | prolyl-tRNA synthetase, family II; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and i [...] (588 aa) |
| | AEV29749.1 | PFAM: Alkaline phosphatase; Belongs to the alkaline phosphatase family. (495 aa) |
| | AEV29714.1 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] (368 aa) |
| | rnpA | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. (122 aa) |
| | pth | peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. (176 aa) |
| | AEV29666.1 | PFAM: Glycerophosphoryl diester phosphodiesterase family. (240 aa) |
| | leuS | PFAM: tRNA synthetases class I (I, L, M and V); Anticodon-binding domain; TIGRFAM: leucyl-tRNA synthetase, eubacterial and mitochondrial family; Belongs to the class-I aminoacyl-tRNA synthetase family. (842 aa) |
| | AEV29650.1 | PFAM: Pectinesterase. (327 aa) |
| | AEV29640.1 | PFAM: EAL domain; GGDEF domain; Response regulator receiver domain; TIGRFAM: diguanylate cyclase (GGDEF) domain. (862 aa) |
| | AEV29630.1 | Lysophospholipase L1-like esterase; PFAM: GDSL-like Lipase/Acylhydrolase. (275 aa) |
| | AEV29622.1 | Hypothetical protein. (359 aa) |
| | AEV29569.1 | PFAM: Protein of unknown function (DUF523). (321 aa) |
| | AEV29370.1 | Preprotein translocase subunit YidC; PFAM: 60Kd inner membrane protein; Sulfatase; TIGRFAM: membrane protein insertase, YidC/Oxa1 family, C-terminal domain. (909 aa) |
| | AEV29315.1 | Arylsulfatase A family protein; PFAM: Sulfatase. (512 aa) |
| | AEV29310.1 | Arylsulfatase A family protein; PFAM: Sulfatase. (451 aa) |
| | AEV29290.1 | Lysophospholipase L1-like esterase; PFAM: GDSL-like Lipase/Acylhydrolase. (213 aa) |
| | AEV29207.1 | Esterase/lipase; PFAM: PGAP1-like protein. (315 aa) |
| | AEV29172.1 | Putative membrane protein. (206 aa) |
| | AEV29161.1 | PFAM: PHP domain; TIGRFAM: histidinol phosphate phosphatase HisJ family; Belongs to the PHP hydrolase family. HisK subfamily. (281 aa) |
| | AEV29128.1 | Hypothetical protein. (989 aa) |
| | uvrC | Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. (615 aa) |
| | AEV29033.1 | Hypothetical protein. (345 aa) |
| | polA | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. (960 aa) |
| | AEV28973.1 | DNA polymerase III epsilon subunit-like 3'-5' exonuclease; PFAM: Exonuclease. (195 aa) |
| | AEV28965.1 | PFAM: Glycerophosphoryl diester phosphodiesterase family. (270 aa) |
| | AEV28949.1 | Zn-dependent hydrolase, glyoxylase; PFAM: Metallo-beta-lactamase superfamily. (215 aa) |
| | AEV28941.1 | Protein-tyrosine-phosphatase; PFAM: Low molecular weight phosphotyrosine protein phosphatase. (137 aa) |
| | AEV28892.1 | PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily; HAD-superfamily hydrolase, subfamily IIB. (268 aa) |
| | AEV28852.1 | PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily; HAD-superfamily hydrolase, subfamily IIB. (268 aa) |
| | sbcD | Exonuclease SbcD; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. (383 aa) |
| | AEV28824.1 | ATPase involved in DNA repair; TIGRFAM: exonuclease SbcC. (1047 aa) |
| | AEV28817.1 | Putative domain HDIG-containing protein; PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG. (159 aa) |
| | AEV28812.1 | Hypothetical protein; PFAM: YbaK / prolyl-tRNA synthetases associated domain. (231 aa) |
| | AEV28811.1 | PFAM: HNH endonuclease. (185 aa) |
| | AEV28784.1 | PFAM: Glycerophosphoryl diester phosphodiesterase family; manually curated. (241 aa) |
| | AEV28718.1 | PFAM: Protein of unknown function DUF88. (259 aa) |
| | AEV28696.1 | PFAM: Restriction endonuclease. (283 aa) |
| | AEV28683.1 | Hypothetical protein. (242 aa) |
| | AEV28669.1 | Diguanylate cyclase; PFAM: HD domain; GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; uncharacterized domain HDIG; diguanylate cyclase (GGDEF) domain. (923 aa) |
| | AEV28666.1 | UV damage endonuclease UvdE; PFAM: Protein of unknown function (DUF1722); UV-endonuclease UvdE; TIGRFAM: UV damage endonuclease UvdE. (417 aa) |
| | AEV28632.1 | Lysophospholipase L1-like esterase; PFAM: GDSL-like Lipase/Acylhydrolase. (237 aa) |
| | xseB | Exonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (68 aa) |
| | xseA | Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. (401 aa) |
| | AEV28600.1 | PFAM: Thioesterase superfamily; TIGRFAM: acyl-CoA thioester hydrolase, YbgC/YbaW family; tol-pal system-associated acyl-CoA thioesterase. (136 aa) |
| | AEV28599.1 | Hypothetical protein. (331 aa) |
| | AEV28596.1 | PFAM: TatD related DNase. (224 aa) |
| | AEV28566.1 | Putative exonuclease of the beta-lactamase fold involved in RNA processing; PFAM: Metallo-beta-lactamase superfamily; RNA-metabolising metallo-beta-lactamase; Beta-Casp domain. (559 aa) |
| | AEV28550.1 | Protein-tyrosine-phosphatase; PFAM: Low molecular weight phosphotyrosine protein phosphatase. (138 aa) |
| | AEV28546.1 | Exodeoxyribonuclease III; PFAM: Endonuclease/Exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III (xth). (271 aa) |
| | AEV28476.1 | dGTP triphosphohydrolase; PFAM: HD domain; TIGRFAM: deoxyguanosinetriphosphate triphosphohydrolase, putative; Belongs to the dGTPase family. Type 2 subfamily. (383 aa) |
| | AEV28471.1 | PFAM: Inositol monophosphatase family. (269 aa) |
| | AEV28384.1 | Zn-dependent hydrolase, glyoxylase; PFAM: Metallo-beta-lactamase superfamily. (184 aa) |
| | AEV28371.1 | Arylsulfatase A family protein; PFAM: Sulfatase. (463 aa) |
| | AEV28367.1 | Arylsulfatase A family protein; PFAM: Sulfatase. (440 aa) |
| | AEV28366.1 | Arylsulfatase A family protein; PFAM: Sulfatase. (489 aa) |
| | rnhB | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (209 aa) |
| | rnc | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. (248 aa) |
| | ileS | isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 2 subfamily. (1042 aa) |
| | rnz | Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. (307 aa) |
| | dtd | D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family. (145 aa) |
| | ruvC | Holliday junction resolvasome, endonuclease subunit; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. (164 aa) |
