16 items (Folsomia candida) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Fcan01_21650	40S ribosomal protein S27. (150 aa)
	Fcan01_15193	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family. (219 aa)
	Fcan01_12918	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (287 aa)
	Fcan01_22459	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family. (152 aa)
	Fcan01_12447	KH type-2 domain-containing protein. (242 aa)
	Fcan01_12724	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (264 aa)
	Fcan01_07513	Uncharacterized protein. (206 aa)
	Fcan01_07070	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (135 aa)
	Fcan01_04610	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (120 aa)
	Fcan01_04560	Uncharacterized protein. (154 aa)
	Fcan01_02278	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (149 aa)
	Fcan01_22577	Putative ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family. (143 aa)
	Fcan01_01984	40S ribosomal protein S20. (121 aa)
	Fcan01_02818	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (273 aa)
	Fcan01_02510	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (145 aa)
	Fcan01_02744	Polyubiquitin. (609 aa)

Your Current Organism:

Folsomia candida

NCBI taxonomy Id: 158441
Other names: F. candida

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Fcan01_01984	Fcan01_02278	A0A226F3D0	A0A226EZH0	40S ribosomal protein S20.	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	0.999
Fcan01_01984	Fcan01_02510	A0A226F3D0	A0A226F5R1	40S ribosomal protein S20.	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.999
Fcan01_01984	Fcan01_02744	A0A226F3D0	A0A226F5T2	40S ribosomal protein S20.	Polyubiquitin.	0.848
Fcan01_01984	Fcan01_02818	A0A226F3D0	A0A226F5D7	40S ribosomal protein S20.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.999
Fcan01_01984	Fcan01_04560	A0A226F3D0	A0A226EQ47	40S ribosomal protein S20.	Uncharacterized protein.	0.999
Fcan01_01984	Fcan01_04610	A0A226F3D0	A0A226EN15	40S ribosomal protein S20.	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	0.999
Fcan01_01984	Fcan01_07070	A0A226F3D0	A0A226EMW4	40S ribosomal protein S20.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.999
Fcan01_01984	Fcan01_07513	A0A226F3D0	A0A226EJH0	40S ribosomal protein S20.	Uncharacterized protein.	0.988
Fcan01_01984	Fcan01_12447	A0A226F3D0	A0A226E895	40S ribosomal protein S20.	KH type-2 domain-containing protein.	0.999
Fcan01_01984	Fcan01_12724	A0A226F3D0	A0A226E8Q2	40S ribosomal protein S20.	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.	0.999
Fcan01_01984	Fcan01_12918	A0A226F3D0	A0A226E3S9	40S ribosomal protein S20.	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	0.999
Fcan01_01984	Fcan01_15193	A0A226F3D0	A0A226DX52	40S ribosomal protein S20.	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.	0.999
Fcan01_01984	Fcan01_21650	A0A226F3D0	A0A226DEM0	40S ribosomal protein S20.	40S ribosomal protein S27.	0.999
Fcan01_01984	Fcan01_22459	A0A226F3D0	A0A226DC15	40S ribosomal protein S20.	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	0.999
Fcan01_01984	Fcan01_22577	A0A226F3D0	A0A226DEG2	40S ribosomal protein S20.	Putative ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.	0.999
Fcan01_02278	Fcan01_01984	A0A226EZH0	A0A226F3D0	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	40S ribosomal protein S20.	0.999
Fcan01_02278	Fcan01_02510	A0A226EZH0	A0A226F5R1	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.999
Fcan01_02278	Fcan01_02744	A0A226EZH0	A0A226F5T2	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	Polyubiquitin.	0.847
Fcan01_02278	Fcan01_02818	A0A226EZH0	A0A226F5D7	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.999
Fcan01_02278	Fcan01_04560	A0A226EZH0	A0A226EQ47	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	Uncharacterized protein.	0.999