(37 nodes) Microbody membrane, and Mpv17/PMP22 network (Diaporthe helianthi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DHEL01_v212998	SGNH_hydro domain-containing protein. (518 aa)
	DHEL01_v212716	Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family. (417 aa)
	DHEL01_v212328	Ubiquitin-conjugating enzyme. (1562 aa)
	DHEL01_v211763	ATPase. (1247 aa)
	DHEL01_v210378	Phytanoyl-CoA dioxygenase family protein. (317 aa)
	DHEL01_v209854	Peroxisomal membrane protein Pmp47; Belongs to the mitochondrial carrier (TC 2.A.29) family. (325 aa)
	DHEL01_v209528	Uncharacterized protein. (146 aa)
	DHEL01_v209075	Uncharacterized protein. (400 aa)
	DHEL01_v209053	Peroxisomal adenine nucleotide transporter 1; Belongs to the mitochondrial carrier (TC 2.A.29) family. (436 aa)
	DHEL01_v208396	Alpha-methylacyl-CoA racemase. (432 aa)
	DHEL01_v207117	Peroxin 5. (632 aa)
	DHEL01_v206924	Pex2/Pex12 amino terminal region. (431 aa)
	DHEL01_v206266	Glutathione-dependent formaldehyde-activating. (230 aa)
	DHEL01_v206272	Peroxisomal membrane protein. (228 aa)
	DHEL01_v206229	Peroxisomal biogenesis factor 6. (1430 aa)
	DHEL01_v205959	Peroxisomal half ABC transporter. (822 aa)
	DHEL01_v205804	Nonspecific lipid-transfer protein; Belongs to the thiolase-like superfamily. Thiolase family. (458 aa)
	DHEL01_v205718	Peroxisomal membrane protein PEX16. (459 aa)
	DHEL01_v205485	Mpv17/PMP22 family protein; Belongs to the peroxisomal membrane protein PXMP2/4 family. (171 aa)
	DHEL01_v205156	Uncharacterized protein; Belongs to the peroxisomal membrane protein PXMP2/4 family. (271 aa)
	DHEL01_v205043	Peroxin 14. (333 aa)
	DHEL01_v205028	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (337 aa)
	DHEL01_v204933	Uncharacterized protein. (606 aa)
	DHEL01_v204211	Peroxisomal membrane protein PAS20. (407 aa)
	DHEL01_v203852	Sym-1; Belongs to the peroxisomal membrane protein PXMP2/4 family. (171 aa)
	DHEL01_v203772	ACB domain-containing protein. (291 aa)
	DHEL01_v203460	Integral membrane protein; Belongs to the peroxisomal membrane protein PXMP2/4 family. (279 aa)
	DHEL01_v203243	Fungal_trans domain-containing protein. (1047 aa)
	DHEL01_v203190	Peroxisomal biogenesis factor 11. (236 aa)
	DHEL01_v202765	Uncharacterized protein. (293 aa)
	DHEL01_v202535	Phytanoyl-CoA hydroxylase. (333 aa)
	DHEL01_v202510	Mpv17/PMP22 family protein; Belongs to the peroxisomal membrane protein PXMP2/4 family. (228 aa)
	DHEL01_v201872	ATPase; Belongs to the AAA ATPase family. (425 aa)
	DHEL01_v201239	Mpv17/PMP22 family protein; Belongs to the peroxisomal membrane protein PXMP2/4 family. (273 aa)
	DHEL01_v200826	ATP-binding cassette protein. (723 aa)
	DHEL01_v200358	WD_REPEATS_REGION domain-containing protein. (364 aa)
	DHEL01_v200103	Peroxin 10. (436 aa)

Your Current Organism:

Diaporthe helianthi

NCBI taxonomy Id: 158607
Other names: CBS 592.81, D. helianthi, Phomopsis helianthi, Phomopsis sp. CBS 187.87

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DHEL01_v200103	DHEL01_v200358	A0A2P5IG80	A0A2P5IFH5	Peroxin 10.	WD_REPEATS_REGION domain-containing protein.	0.845
DHEL01_v200103	DHEL01_v201239	A0A2P5IG80	A0A2P5ICZ4	Peroxin 10.	Mpv17/PMP22 family protein; Belongs to the peroxisomal membrane protein PXMP2/4 family.	0.576
DHEL01_v200103	DHEL01_v201872	A0A2P5IG80	A0A2P5IB58	Peroxin 10.	ATPase; Belongs to the AAA ATPase family.	0.642
DHEL01_v200103	DHEL01_v202510	A0A2P5IG80	A0A2P5I9B2	Peroxin 10.	Mpv17/PMP22 family protein; Belongs to the peroxisomal membrane protein PXMP2/4 family.	0.576
DHEL01_v200103	DHEL01_v202535	A0A2P5IG80	A0A2P5I9A0	Peroxin 10.	Phytanoyl-CoA hydroxylase.	0.649
DHEL01_v200103	DHEL01_v202765	A0A2P5IG80	A0A2P5I8K1	Peroxin 10.	Uncharacterized protein.	0.942
DHEL01_v200103	DHEL01_v203190	A0A2P5IG80	A0A2P5I7H8	Peroxin 10.	Peroxisomal biogenesis factor 11.	0.783
DHEL01_v200103	DHEL01_v203460	A0A2P5IG80	A0A2P5I6L5	Peroxin 10.	Integral membrane protein; Belongs to the peroxisomal membrane protein PXMP2/4 family.	0.576
DHEL01_v200103	DHEL01_v203772	A0A2P5IG80	A0A2P5I5Q9	Peroxin 10.	ACB domain-containing protein.	0.622
DHEL01_v200103	DHEL01_v203852	A0A2P5IG80	A0A2P5I5H9	Peroxin 10.	Sym-1; Belongs to the peroxisomal membrane protein PXMP2/4 family.	0.671
DHEL01_v200103	DHEL01_v204211	A0A2P5IG80	A0A2P5I4G4	Peroxin 10.	Peroxisomal membrane protein PAS20.	0.961
DHEL01_v200103	DHEL01_v204933	A0A2P5IG80	A0A2P5I2B6	Peroxin 10.	Uncharacterized protein.	0.541
DHEL01_v200103	DHEL01_v205043	A0A2P5IG80	A0A2P5I261	Peroxin 10.	Peroxin 14.	0.934
DHEL01_v200103	DHEL01_v205156	A0A2P5IG80	A0A2P5I1W2	Peroxin 10.	Uncharacterized protein; Belongs to the peroxisomal membrane protein PXMP2/4 family.	0.577
DHEL01_v200103	DHEL01_v205485	A0A2P5IG80	A0A2P5I0W9	Peroxin 10.	Mpv17/PMP22 family protein; Belongs to the peroxisomal membrane protein PXMP2/4 family.	0.576
DHEL01_v200103	DHEL01_v205718	A0A2P5IG80	A0A2P5I086	Peroxin 10.	Peroxisomal membrane protein PEX16.	0.532
DHEL01_v200103	DHEL01_v205804	A0A2P5IG80	A0A2P5HZX8	Peroxin 10.	Nonspecific lipid-transfer protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.977
DHEL01_v200103	DHEL01_v206229	A0A2P5IG80	A0A2P5HYQ3	Peroxin 10.	Peroxisomal biogenesis factor 6.	0.884
DHEL01_v200103	DHEL01_v206266	A0A2P5IG80	A0A2P5HYL3	Peroxin 10.	Glutathione-dependent formaldehyde-activating.	0.576
DHEL01_v200103	DHEL01_v206924	A0A2P5IG80	A0A2P5HWS6	Peroxin 10.	Pex2/Pex12 amino terminal region.	0.998