(5 nodes) Proteasomal ATPase OB C-terminal domain, and Proteasome/cyclosome repeat network (Diaporthe helianthi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DHEL01_v209336	26S protease regulatory subunit 6A-B; Belongs to the AAA ATPase family. (468 aa)
	DHEL01_v208660	26S proteasome regulatory subunit RPN2; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. (1181 aa)
	DHEL01_v207102	26S protease regulatory subunit 8; Belongs to the AAA ATPase family. (495 aa)
	DHEL01_v202324	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family. (420 aa)
	DHEL01_v200429	26S proteasome regulatory subunit rpn-8. (354 aa)

Your Current Organism:

Diaporthe helianthi

NCBI taxonomy Id: 158607
Other names: CBS 592.81, D. helianthi, Phomopsis helianthi, Phomopsis sp. CBS 187.87

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DHEL01_v200429	DHEL01_v202324	A0A2P5IF80	A0A2P5I9W1	26S proteasome regulatory subunit rpn-8.	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family.	0.999
DHEL01_v200429	DHEL01_v207102	A0A2P5IF80	A0A2P5HW66	26S proteasome regulatory subunit rpn-8.	26S protease regulatory subunit 8; Belongs to the AAA ATPase family.	0.999
DHEL01_v200429	DHEL01_v208660	A0A2P5IF80	A0A2P5HRQ0	26S proteasome regulatory subunit rpn-8.	26S proteasome regulatory subunit RPN2; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.999
DHEL01_v200429	DHEL01_v209336	A0A2P5IF80	A0A2P5HPX5	26S proteasome regulatory subunit rpn-8.	26S protease regulatory subunit 6A-B; Belongs to the AAA ATPase family.	0.999
DHEL01_v202324	DHEL01_v200429	A0A2P5I9W1	A0A2P5IF80	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family.	26S proteasome regulatory subunit rpn-8.	0.999
DHEL01_v202324	DHEL01_v207102	A0A2P5I9W1	A0A2P5HW66	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family.	26S protease regulatory subunit 8; Belongs to the AAA ATPase family.	0.999
DHEL01_v202324	DHEL01_v208660	A0A2P5I9W1	A0A2P5HRQ0	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family.	26S proteasome regulatory subunit RPN2; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.998
DHEL01_v202324	DHEL01_v209336	A0A2P5I9W1	A0A2P5HPX5	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family.	26S protease regulatory subunit 6A-B; Belongs to the AAA ATPase family.	0.999
DHEL01_v207102	DHEL01_v200429	A0A2P5HW66	A0A2P5IF80	26S protease regulatory subunit 8; Belongs to the AAA ATPase family.	26S proteasome regulatory subunit rpn-8.	0.999
DHEL01_v207102	DHEL01_v202324	A0A2P5HW66	A0A2P5I9W1	26S protease regulatory subunit 8; Belongs to the AAA ATPase family.	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family.	0.999
DHEL01_v207102	DHEL01_v208660	A0A2P5HW66	A0A2P5HRQ0	26S protease regulatory subunit 8; Belongs to the AAA ATPase family.	26S proteasome regulatory subunit RPN2; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.999
DHEL01_v207102	DHEL01_v209336	A0A2P5HW66	A0A2P5HPX5	26S protease regulatory subunit 8; Belongs to the AAA ATPase family.	26S protease regulatory subunit 6A-B; Belongs to the AAA ATPase family.	0.999
DHEL01_v208660	DHEL01_v200429	A0A2P5HRQ0	A0A2P5IF80	26S proteasome regulatory subunit RPN2; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	26S proteasome regulatory subunit rpn-8.	0.999
DHEL01_v208660	DHEL01_v202324	A0A2P5HRQ0	A0A2P5I9W1	26S proteasome regulatory subunit RPN2; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family.	0.998
DHEL01_v208660	DHEL01_v207102	A0A2P5HRQ0	A0A2P5HW66	26S proteasome regulatory subunit RPN2; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	26S protease regulatory subunit 8; Belongs to the AAA ATPase family.	0.999
DHEL01_v208660	DHEL01_v209336	A0A2P5HRQ0	A0A2P5HPX5	26S proteasome regulatory subunit RPN2; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	26S protease regulatory subunit 6A-B; Belongs to the AAA ATPase family.	0.999
DHEL01_v209336	DHEL01_v200429	A0A2P5HPX5	A0A2P5IF80	26S protease regulatory subunit 6A-B; Belongs to the AAA ATPase family.	26S proteasome regulatory subunit rpn-8.	0.999
DHEL01_v209336	DHEL01_v202324	A0A2P5HPX5	A0A2P5I9W1	26S protease regulatory subunit 6A-B; Belongs to the AAA ATPase family.	26S protease regulatory subunit 6B; Belongs to the AAA ATPase family.	0.999
DHEL01_v209336	DHEL01_v207102	A0A2P5HPX5	A0A2P5HW66	26S protease regulatory subunit 6A-B; Belongs to the AAA ATPase family.	26S protease regulatory subunit 8; Belongs to the AAA ATPase family.	0.999
DHEL01_v209336	DHEL01_v208660	A0A2P5HPX5	A0A2P5HRQ0	26S protease regulatory subunit 6A-B; Belongs to the AAA ATPase family.	26S proteasome regulatory subunit RPN2; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.999