(16 nodes) AAA ATPase, AAA+ lid domain network (Diaporthe helianthi)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DHEL01_v208348	Uncharacterized protein. (1664 aa)
	DHEL01_v208415	ATP-dependent metallopeptidase HflB. (880 aa)
	DHEL01_v210210	26S protease regulatory subunit 4; Belongs to the AAA ATPase family. (459 aa)
	DHEL01_v210493	Proteasome-activating nucleotidase; Belongs to the AAA ATPase family. (390 aa)
	DHEL01_v211032	Adenosinetriphosphatase; Belongs to the AAA ATPase family. (820 aa)
	DHEL01_v211449	26S protease regulatory subunit 7; Belongs to the AAA ATPase family. (439 aa)
	DHEL01_v211726	ATPase family AAA domain-containing protein 1. (1221 aa)
	DHEL01_v211763	ATPase. (1247 aa)
	DHEL01_v208246	Vesicular-fusion protein SEC18. (837 aa)
	DHEL01_v207102	26S protease regulatory subunit 8; Belongs to the AAA ATPase family. (495 aa)
	DHEL01_v205088	Vacuolar protein sorting-associated protein VPS4; Belongs to the AAA ATPase family. (439 aa)
	DHEL01_v204036	ATP-dependent metallopeptidase HflB. (798 aa)
	DHEL01_v200446	Uncharacterized protein. (743 aa)
	DHEL01_v201872	ATPase; Belongs to the AAA ATPase family. (425 aa)
	DHEL01_v201819	Cell division control protein Cdc48; Belongs to the AAA ATPase family. (819 aa)
	DHEL01_v202486	AAA family ATPase/60S ribosome export protein Rix7. (766 aa)

Your Current Organism:

Diaporthe helianthi

NCBI taxonomy Id: 158607
Other names: CBS 592.81, D. helianthi, Phomopsis helianthi, Phomopsis sp. CBS 187.87

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DHEL01_v200446	DHEL01_v202486	A0A2P5IF93	A0A2P5I9F8	Uncharacterized protein.	AAA family ATPase/60S ribosome export protein Rix7.	0.517
DHEL01_v200446	DHEL01_v205088	A0A2P5IF93	A0A2P5I1X1	Uncharacterized protein.	Vacuolar protein sorting-associated protein VPS4; Belongs to the AAA ATPase family.	0.527
DHEL01_v200446	DHEL01_v207102	A0A2P5IF93	A0A2P5HW66	Uncharacterized protein.	26S protease regulatory subunit 8; Belongs to the AAA ATPase family.	0.814
DHEL01_v200446	DHEL01_v208348	A0A2P5IF93	A0A2P5HSL7	Uncharacterized protein.	Uncharacterized protein.	0.575
DHEL01_v200446	DHEL01_v210210	A0A2P5IF93	A0A2P5HM97	Uncharacterized protein.	26S protease regulatory subunit 4; Belongs to the AAA ATPase family.	0.820
DHEL01_v200446	DHEL01_v210493	A0A2P5IF93	A0A2P5HLJ7	Uncharacterized protein.	Proteasome-activating nucleotidase; Belongs to the AAA ATPase family.	0.780
DHEL01_v200446	DHEL01_v211449	A0A2P5IF93	A0A2P5HIS3	Uncharacterized protein.	26S protease regulatory subunit 7; Belongs to the AAA ATPase family.	0.820
DHEL01_v201819	DHEL01_v202486	A0A2P5IBA6	A0A2P5I9F8	Cell division control protein Cdc48; Belongs to the AAA ATPase family.	AAA family ATPase/60S ribosome export protein Rix7.	0.423
DHEL01_v201819	DHEL01_v205088	A0A2P5IBA6	A0A2P5I1X1	Cell division control protein Cdc48; Belongs to the AAA ATPase family.	Vacuolar protein sorting-associated protein VPS4; Belongs to the AAA ATPase family.	0.485
DHEL01_v201819	DHEL01_v207102	A0A2P5IBA6	A0A2P5HW66	Cell division control protein Cdc48; Belongs to the AAA ATPase family.	26S protease regulatory subunit 8; Belongs to the AAA ATPase family.	0.807
DHEL01_v201819	DHEL01_v208348	A0A2P5IBA6	A0A2P5HSL7	Cell division control protein Cdc48; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.535
DHEL01_v201819	DHEL01_v210210	A0A2P5IBA6	A0A2P5HM97	Cell division control protein Cdc48; Belongs to the AAA ATPase family.	26S protease regulatory subunit 4; Belongs to the AAA ATPase family.	0.813
DHEL01_v201819	DHEL01_v210493	A0A2P5IBA6	A0A2P5HLJ7	Cell division control protein Cdc48; Belongs to the AAA ATPase family.	Proteasome-activating nucleotidase; Belongs to the AAA ATPase family.	0.768
DHEL01_v201819	DHEL01_v211449	A0A2P5IBA6	A0A2P5HIS3	Cell division control protein Cdc48; Belongs to the AAA ATPase family.	26S protease regulatory subunit 7; Belongs to the AAA ATPase family.	0.811
DHEL01_v201872	DHEL01_v205088	A0A2P5IB58	A0A2P5I1X1	ATPase; Belongs to the AAA ATPase family.	Vacuolar protein sorting-associated protein VPS4; Belongs to the AAA ATPase family.	0.516
DHEL01_v201872	DHEL01_v207102	A0A2P5IB58	A0A2P5HW66	ATPase; Belongs to the AAA ATPase family.	26S protease regulatory subunit 8; Belongs to the AAA ATPase family.	0.511
DHEL01_v201872	DHEL01_v208348	A0A2P5IB58	A0A2P5HSL7	ATPase; Belongs to the AAA ATPase family.	Uncharacterized protein.	0.460
DHEL01_v201872	DHEL01_v210210	A0A2P5IB58	A0A2P5HM97	ATPase; Belongs to the AAA ATPase family.	26S protease regulatory subunit 4; Belongs to the AAA ATPase family.	0.509
DHEL01_v201872	DHEL01_v210493	A0A2P5IB58	A0A2P5HLJ7	ATPase; Belongs to the AAA ATPase family.	Proteasome-activating nucleotidase; Belongs to the AAA ATPase family.	0.597
DHEL01_v201872	DHEL01_v211449	A0A2P5IB58	A0A2P5HIS3	ATPase; Belongs to the AAA ATPase family.	26S protease regulatory subunit 7; Belongs to the AAA ATPase family.	0.521