(17 nodes) Two-component sensor kinase N-terminal, and OmpR/PhoB-type DNA-binding domain network (Pandoraea sp. ISTKB)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ODP35727.1	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (368 aa)
	ODP32892.1	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (220 aa)
	ODP32893.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (445 aa)
	ODP32112.1	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (200 aa)
	ODP31181.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (468 aa)
	ODP31289.1	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)
	ODP34701.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (243 aa)
	ODP33934.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (457 aa)
	ODP33935.1	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (220 aa)
	ODP33850.1	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)
	ODP33819.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (478 aa)
	ODP33334.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (537 aa)
	ODP33335.1	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)
	A9762_20230	DNA-binding response regulator; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology. (472 aa)
	ODP32556.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (519 aa)
	ODP32330.1	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (221 aa)
	ODP32331.1	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (442 aa)

Your Current Organism:

Pandoraea sp. ISTKB

NCBI taxonomy Id: 1586708
Other names: P. sp. ISTKB

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A9762_20230	ODP31181.1	A9762_20230	A9762_07055	DNA-binding response regulator; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.520
A9762_20230	ODP31289.1	A9762_20230	A9762_07060	DNA-binding response regulator; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.891
A9762_20230	ODP32112.1	A9762_20230	A9762_05160	DNA-binding response regulator; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.779
A9762_20230	ODP32330.1	A9762_20230	A9762_23645	DNA-binding response regulator; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.910
A9762_20230	ODP32556.1	A9762_20230	A9762_22660	DNA-binding response regulator; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.998
A9762_20230	ODP32892.1	A9762_20230	A9762_04200	DNA-binding response regulator; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.914
A9762_20230	ODP33334.1	A9762_20230	A9762_19460	DNA-binding response regulator; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.491
A9762_20230	ODP33335.1	A9762_20230	A9762_19465	DNA-binding response regulator; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.905
A9762_20230	ODP33819.1	A9762_20230	A9762_17175	DNA-binding response regulator; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.507
A9762_20230	ODP33850.1	A9762_20230	A9762_17170	DNA-binding response regulator; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.891
A9762_20230	ODP33934.1	A9762_20230	A9762_16685	DNA-binding response regulator; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.517
A9762_20230	ODP33935.1	A9762_20230	A9762_16690	DNA-binding response regulator; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.886
A9762_20230	ODP34701.1	A9762_20230	A9762_13910	DNA-binding response regulator; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.794
A9762_20230	ODP35727.1	A9762_20230	A9762_01675	DNA-binding response regulator; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.824
ODP31181.1	A9762_20230	A9762_07055	A9762_20230	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Incomplete; partial in the middle of a contig; missing stop; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.520
ODP31181.1	ODP31289.1	A9762_07055	A9762_07060	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
ODP31181.1	ODP32112.1	A9762_07055	A9762_05160	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.791
ODP31181.1	ODP32330.1	A9762_07055	A9762_23645	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.876
ODP31181.1	ODP32331.1	A9762_07055	A9762_23650	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Two-component sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.511
ODP31181.1	ODP32556.1	A9762_07055	A9762_22660	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.998